Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0794.Seq
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.025
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.23
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.23
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 3.8
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8) 27 8.8
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 27 8.8
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 414 DVVAVSQAPSPESNPDSPLPVTTM 343
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1
Query: 405 AVSQAPSPESNPDSPLPVTTM 343
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 36.3 bits (80), Expect = 0.011
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 3 VICLSQRLSHACLSASRIKAIPRMA 77
VICLSQRLSHACLS S RMA
Sbjct: 137 VICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 35.5 bits (78), Expect = 0.019
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = +3
Query: 3 VICLSQRLSHACLSASRIKAIPRMA 77
VICLSQRLSHACLS S RMA
Sbjct: 113 VICLSQRLSHACLSISTRTVKLRMA 137
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.025
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 404 PFLRLPLRNRTLIPRYP 354
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 4 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 138
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.23
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 4 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 138
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 363 GNQGSIPEREPEKRLPHPRKAAGR 434
GN+GS + E EK LP P K A R
Sbjct: 52 GNEGSEGDGEKEKMLPSPEKKAKR 75
>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 251 WKLLQIAWSSTGDASFKCLP 310
W +Q+AW + G+ FK +P
Sbjct: 293 WSRVQVAWKTVGEEKFKIIP 312
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 423 PSLDVVAVSQAPSPESNPDSPLP 355
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 62 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 178
D NG+I F + W + LE IH + TL DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301
>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
Length = 688
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 253 PDSSKLTTSDARPSVDWF*SNKSTHPITGQS 161
PDS+ L D S +WF N S P TG +
Sbjct: 627 PDSAHLRREDTSKSAEWF--NMSFEPETGSN 655
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 423 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 322
P ++ P P++ P P P TTM TTI
Sbjct: 438 PPPSIIPPPTTPLPQTVPTPPRPPTTMTTILTTI 471
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 26.6 bits (56), Expect = 8.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 23 IKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 199
+KPC S P + +++ +VT+ V + IH R TL+SD M A S
Sbjct: 35 LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91
Query: 200 KPIDG 214
+P+DG
Sbjct: 92 RPLDG 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,432
Number of Sequences: 59808
Number of extensions: 263617
Number of successful extensions: 727
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -