Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0794.Seq
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.59 
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   1.8  
At4g38560.1 68417.m05459 expressed protein                             28   3.1  
At4g17410.1 68417.m02607 expressed protein                             27   5.5  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   9.5  
At3g05660.1 68416.m00630 disease resistance family protein conta...    26   9.5  
At1g80260.1 68414.m09396 tubulin family protein                        26   9.5  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    26   9.5  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 250 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 155
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 423 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 316
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 2   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 145
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 195 DQNQSTEGLASEVVN-FDESGNFCRSHGQVPATHLSNVC 308
           D N      AS V + FDE GN   S    PA H +N+C
Sbjct: 19  DMNNVITADASPVEDEFDEFGNDLYSIPDAPAVHSNNLC 57


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 222 RGPPSIGFDLIKALIPSLVRVL 157
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 183 VLLLDQNQSTEGLASEVVNFDESGNFCRSHGQVPATHLSNV 305
           +L LD N+ +  L  EV+N  +      SH Q   T   N+
Sbjct: 211 ILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNI 251


>At1g80260.1 68414.m09396 tubulin family protein
          Length = 951

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 204 QSTEGLASEVVNFDESGNFCRSHGQVPATHLSNVCL 311
           Q+ +GL+S  + +D++G   R+   +  +HLS+  L
Sbjct: 45  QALQGLSSPFLFWDQTGQTFRAKSHIRVSHLSHSSL 80


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 252 GNFCRSHGQVPATHLSNVCLINFRW 326
           GNF   +   PATH+  V    F+W
Sbjct: 297 GNFASQNPNAPATHMPPVSRNTFQW 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,551,990
Number of Sequences: 28952
Number of extensions: 184173
Number of successful extensions: 468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)