Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0790.Seq
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   2.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   2.2  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   3.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   3.8  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 133 VYXCNVNYPCFCF 95
           +Y  N+ Y CFCF
Sbjct: 316 IYTFNLFYLCFCF 328


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 133 VYXCNVNYPCFCF 95
           +Y  N+ Y CFCF
Sbjct: 272 IYTFNLFYLCFCF 284


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 107 VFLF*FCILLSNKKMXC----CDLWIIXYKRIKE 18
           +FL   CIL +  ++      C+L I+ YKR K+
Sbjct: 279 IFLPLLCILTNTLEILITVTVCELTILEYKRTKK 312


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 107 VFLF*FCILLSNKKMXC----CDLWIIXYKRIKE 18
           +FL   CIL +  ++      C+L I+ YKR K+
Sbjct: 104 IFLPLLCILTNTLEILITVTVCELTILEYKRTKK 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,276
Number of Sequences: 336
Number of extensions: 1187
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)