Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0790.Seq
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)                28   3.8  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    28   3.8  
SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05)       28   3.8  

>SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)
          Length = 911

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 340 GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176
           G+     C++  P L+F        Q  F YF +L+  +L       F+ + FD+
Sbjct: 59  GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 113


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 340  GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176
            G+     C++  P L+F        Q  F YF +L+  +L       F+ + FD+
Sbjct: 850  GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 904


>SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05)
          Length = 180

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 340 GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176
           G+     C++  P L+F        Q  F YF +L+  +L       F+ + FD+
Sbjct: 59  GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,883
Number of Sequences: 59808
Number of extensions: 126680
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)