BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0790.Seq (429 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0) 28 3.8 SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 28 3.8 SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05) 28 3.8 >SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0) Length = 911 Score = 27.9 bits (59), Expect = 3.8 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = -3 Query: 340 GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176 G+ C++ P L+F Q F YF +L+ +L F+ + FD+ Sbjct: 59 GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 113 >SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) Length = 1075 Score = 27.9 bits (59), Expect = 3.8 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = -3 Query: 340 GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176 G+ C++ P L+F Q F YF +L+ +L F+ + FD+ Sbjct: 850 GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 904 >SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05) Length = 180 Score = 27.9 bits (59), Expect = 3.8 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = -3 Query: 340 GSXXGRQCLALEPSLIF*VIXSXKIQTPFAYFIKLYTSMLHXQI*FKFSPMSFDF 176 G+ C++ P L+F Q F YF +L+ +L F+ + FD+ Sbjct: 59 GNDAALACISTHPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDY 113 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,049,883 Number of Sequences: 59808 Number of extensions: 126680 Number of successful extensions: 193 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 193 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 826502419 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -