Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0789.Seq
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 94 RQGHPPHHRRG 62
          RQG PPHH  G
Sbjct: 57 RQGIPPHHYGG 67


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 375 WCGHHALPSTEHSXVPVVT 431
           W GHH   S     VP VT
Sbjct: 135 WHGHHQKNSPYMDGVPFVT 153


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 224  PARDIPAPSTLCTSXTPRDTPSPR 153
            P R+  +P++   S TPR T   R
Sbjct: 930  PCRNSASPASSDRSGTPRSTNGDR 953


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,073
Number of Sequences: 336
Number of extensions: 2183
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)