Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0789.Seq
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 143 9e-36
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 142 2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 142 2e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.044
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 3.9
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 3.9
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 5.1
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 5.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 6.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 8.9
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 24 8.9
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 9e-36
Identities = 70/126 (55%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K VP+LVTHDGRTI PDPLIKVND+I+L+ + + V G RN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
TIV RE H GSF+I+H+K + FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERD 253
Query: 54 KRIAAK 37
+R A K
Sbjct: 254 RRRALK 259
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 70/126 (55%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K VP+LVTHDGRTI PDPLIKVND+I+L+ + + V G RN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
TIV RE H GSF+I+H+K + FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERD 253
Query: 54 KRIAAK 37
+R A K
Sbjct: 254 RRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 70/126 (55%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K VP+LVTHDGRTI PDPLIKVND+I+L+ + + V G RN+GRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
TIV RE H GSF+I+H+K + FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD
Sbjct: 194 TIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERD 253
Query: 54 KRIAAK 37
+R A K
Sbjct: 254 RRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.044
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +1
Query: 106 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD-GAHTPQVTP-SV 264
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+ G +T +
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLHITTVNE 946
Query: 265 IIHKFPDS 288
++H P S
Sbjct: 947 MMHNVPSS 954
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 342 DSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIK 181
D +L Y + H VW++ Y H GR S+++ FD+V++K
Sbjct: 197 DPSELPTKEYHVFHDHSDEVWQISYSHN----GRYLASASKDKTAIIFDVVNLK 246
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 276 LVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKXSTG 169
L+ D + +GR G++ S E H DI+ + S G
Sbjct: 248 LIIDEAQTGIGRTGSMFSFEHHGIVPDILTLSKSLG 283
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 237 GTIVSRERHPGSFDIVHIKXSTGHTFATRLNN 142
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.0 bits (52), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 402 YLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQ 292
++V D TI +PL K+ S ++ CN ED G+ +
Sbjct: 494 HVVFGDDETIQL-EPLKKIGASKLVELCNDEDLGVQE 529
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 385 WPHHXXPRPTYQSQR 341
WPHH P + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 210 DVSRGTRWCPHAPSYAFRDHTQVPRLKLDEVHNLRSC 320
D+++ TRW P + +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP----MDIQGLQDIPRPLRDKVHILRDC 1233
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 112 RLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAH 240
RL +AD + + RG+G+ + + G+G L +D H
Sbjct: 284 RLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVH 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,962
Number of Sequences: 5004
Number of extensions: 32588
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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