Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0789.Seq
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 140 4e-34
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 139 1e-33
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 132 9e-32
04_04_0040 + 22322839-22324173 33 0.10
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 0.71
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 1.2
12_02_0759 - 22882435-22882731 29 1.6
12_02_0735 - 22636835-22639502,22639755-22640734 29 1.6
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 2.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 2.2
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 2.9
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 2.9
04_04_0946 - 29579779-29580004,29580098-29580210 27 5.0
06_01_0918 + 7083570-7083705,7083977-7084008 27 6.6
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 27 8.7
11_01_0732 + 6065852-6066531,6067066-6067141,6067231-6067357,606... 27 8.7
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277... 27 8.7
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 27 8.7
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 140 bits (339), Expect = 4e-34
Identities = 67/125 (53%), Positives = 88/125 (70%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +PYL T+DGRTI PDPLIK ND+I++D + + V +V G RN GRVG
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I +RE+H GSF+ +H++ + GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+
Sbjct: 194 VIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQR 253
Query: 54 KRIAA 40
KR AA
Sbjct: 254 KRDAA 258
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 139 bits (336), Expect = 1e-33
Identities = 66/125 (52%), Positives = 88/125 (70%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +PYL T+DGRTI PDP+IK ND+I++D + + V +V G RN GRVG
Sbjct: 134 KGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I +RE+H GSF+ +H++ + GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+
Sbjct: 194 VIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQR 253
Query: 54 KRIAA 40
KR AA
Sbjct: 254 KRDAA 258
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 132 bits (320), Expect = 9e-32
Identities = 64/124 (51%), Positives = 85/124 (68%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +P+L T+DGRTI PDPLIK ND+I++D + + V +V G RN GRVG
Sbjct: 150 KGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVG 209
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I SRE+H GSF+ +H++ + GH FATR+ NVF IGK K ++SLP+GKGI+L+I EE
Sbjct: 210 VIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSIIEEAR 269
Query: 54 KRIA 43
KR A
Sbjct: 270 KRNA 273
>04_04_0040 + 22322839-22324173
Length = 444
Score = 33.1 bits (72), Expect = 0.10
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 214 TSRL--LR-HCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
TSRL LR H H HG + RH++ +R R H L A G P + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 134 MNTLFNLVAKVCPVEXLMCTMSKEPGCLSRDTMVPTRPKLR 256
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 159 RRCVPWSX*CA--QCRRSRDVSRGTRWCPHAPSYAF 260
+RC+P S A +CR+SR S+ W P+ S+ +
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSFRY 458
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 169 THLRHEVEQRVHNRQGHEGVH-LAAARQGHPPHHRRGAGQAHRSQG 35
TH RH + +R R+G G L A R P H G G+ R +G
Sbjct: 42 THERHHLVERGQRRRGDRGAGVLGADRVEEGPQH--GGGERRRGRG 85
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 236 APSCPARDI--PAPSTLCTSXTPRDTPSP 156
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -1
Query: 223 PRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG--HPPHHRRGAGQA 50
P +RL RH HG R + E + GH H G P HH RG GQA
Sbjct: 15 PEAHARLPRHAPPAGGHGRGGRGQ-EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQA 73
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 100 AARQGHPPHHRRGAG 56
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -1
Query: 154 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 23
EV++ H R+ H + R+ H HH + Q R A+
Sbjct: 54 EVDRAKHRRKKRAAAHAVSVRKEHRNHHHHHRHHHQQPQPRPAI 97
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 245 GVWAPSCPARDIPAPSTLCTSXT-PRDTP 162
G+W PS A + AP++ S T PR TP
Sbjct: 10 GLWRPSAHAAALRAPASSVLSTTPPRQTP 38
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 163 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 65
+ HE+ Q +H+ Q + + GH HHRR
Sbjct: 234 ISHEL-QHIHHHQQQQFYYHEVVHDGHGHHHRR 265
>11_01_0732 +
6065852-6066531,6067066-6067141,6067231-6067357,
6068084-6068289
Length = 362
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 121 HEGVHLAAARQGHPPHHRRGAGQAHRSQ 38
+ G H AR PHHR G G H +
Sbjct: 28 YAGDHGPIARPQGAPHHRHGHGHGHHQR 55
>05_01_0354 +
2770515-2770655,2770767-2771380,2772152-2772341,
2772570-2772634,2772719-2773214
Length = 501
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 78 GGCPCRAAARCTPSCPCR 131
G P RAA RC PS CR
Sbjct: 77 GRPPARAAFRCAPSLTCR 94
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 286 SNLMKSIIFVVAXV*LDGIVDFDKWVWVADGAAIMRY 396
S++ I+F VA V I DFD+ W++ AA+M +
Sbjct: 172 SSVPYMIVFGVAEVFFSQIPDFDQISWLSMLAAVMSF 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,244
Number of Sequences: 37544
Number of extensions: 297726
Number of successful extensions: 1100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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