Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0789.Seq
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 5e-39
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 32 0.24
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24) 30 0.96
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 29 2.2
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 28 3.9
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13) 28 3.9
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 28 3.9
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 6.8
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_56813| Best HMM Match : Cadherin (HMM E-Value=5.8e-40) 27 8.9
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 27 8.9
SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4) 27 8.9
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 27 8.9
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 8.9
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 157 bits (380), Expect = 5e-39
Identities = 72/126 (57%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K VPY+VTHD RTI PDP IKVND++ +D + + + G RN+GRVG
Sbjct: 558 KGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVG 617
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
+ RE+H GSFDIVH+K +TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+IAEERD
Sbjct: 618 MVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSIAEERD 677
Query: 54 KRIAAK 37
+RIA K
Sbjct: 678 RRIAEK 683
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 31.9 bits (69), Expect = 0.24
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 272 CMITEGVTWGVWAPSCPARDIPAPSTLCT 186
C T G WG+ CPA+D A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450
>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.9 bits (64), Expect = 0.96
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 202 GAGMSLAGHDGAHTPQVTPSVIIHKFPDSNL 294
G S GH G++ PQ + V+I FP +NL
Sbjct: 233 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 263
>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
Length = 565
Score = 29.9 bits (64), Expect = 0.96
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 202 GAGMSLAGHDGAHTPQVTPSVIIHKFPDSNL 294
G S GH G++ PQ + V+I FP +NL
Sbjct: 380 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 410
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 148 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 147 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 34
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 147 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 34
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 65
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 142 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 44
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 142 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 44
+VHN +G EGV R GH H++RG+ R
Sbjct: 30 KVHNERGSPSTHREGVTRYTTRGGHQVHNQRGSPSTQR 67
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 47 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVEXLMCTMSKEP 208
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 167 CPVEXLMCTMS-KEPGCLSRDTMVPTRPKLRLP 262
C + +CT+ KEPG DT PTR K +LP
Sbjct: 556 CTADNDLCTVCCKEPG--KDDTCTPTRDKTQLP 586
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 241 CGH-HRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 68
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 609
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 287 ESGNLCMITEGVTWGVWAPSCPARDIPAPSTLCTSXTPRDTP 162
+ GN C +++ W V + SC A+ S CT P
Sbjct: 164 DDGNPCKVSDWSKWSVCSQSCGAQATQTRSRKCTCVRGNQCP 205
>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
Length = 366
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 287 ESGNLCMITEGVTWGVWAPSCPARDIPAPSTLCTSXTPRDTP 162
+ GN C +++ W V + SC A+ S CT P
Sbjct: 164 DDGNPCKVSDWSKWSVCSQSCGAQATQTRSRKCTCVRGNQCP 205
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 199 RHCAHQXLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 71
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 169 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 41
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 21 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 164
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 160 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 29
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 160 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 20
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_56813| Best HMM Match : Cadherin (HMM E-Value=5.8e-40)
Length = 211
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 175 GVLDVHNVEGAGMSLAGHDGAHTPQVTPSVIIHKFPDSN 291
G LD NV+ ++L DG ++ + T +V + D+N
Sbjct: 82 GTLDRENVDHYKLTLTAKDGKYSGEATVNVYVLDINDNN 120
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = -1
Query: 235 HHRVPRETSRLLRHC--AHQXLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPP 77
HH P E + L +H H H+R +R H R+ +G R+ PP
Sbjct: 571 HHHHPHELPQPLSSSPSSHYHSHNQHIRRSPGRRGHRRENVVEQGCKRGRGREKIPP 627
>SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)
Length = 145
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 145 QRVHNRQGHEGVHLAAARQGHPPHHR----RGAGQAHRSQGRRAV 23
+R RQG G H ARQG +R +G HR++ R+ +
Sbjct: 69 ERCRTRQGVTGCHRTRARQGMTGCYRTRAPKGMTGCHRTRARKGM 113
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +3
Query: 105 RCTPSCPCRL*TRCSTSWRRCVPWSX*CAQCRRSRDVSRGTRWCPHAPSY 254
RC+ PC C +C+P S C ++ GT C +A Y
Sbjct: 900 RCSCCPPCFTGQHCEKGINKCIPSSNPCKNGATCSNL-HGTYTCTYATGY 948
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = -1
Query: 175 HGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
H H RH H+ Q H H R H HH + HR
Sbjct: 311 HHHHHRHHHHHHHHHHQRHR--HRHRHRHRHHHHHHHEYNRRHR 352
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,499
Number of Sequences: 59808
Number of extensions: 311173
Number of successful extensions: 1002
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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