Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0789.Seq
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 145 1e-35
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 36 0.010
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 0.28
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 1.1
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 1.1
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 2.6
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 3.4
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 3.4
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 27 4.5
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 4.5
U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog (hedgeh... 27 4.5
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical ... 27 6.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 145 bits (352), Expect = 1e-35
Identities = 74/130 (56%), Positives = 89/130 (68%)
Frame = -2
Query: 426 RXVXKNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNL 247
R V K VP L T DGRTI PDP +KVND+I + + + L Y G RN+
Sbjct: 129 RTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNV 188
Query: 246 GRVGTIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 67
GRVG I RER PG+ DI+HIK S GH+FATR++NVF+IGKG KA +SLP G GIRL+IA
Sbjct: 189 GRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIA 248
Query: 66 EERDKRIAAK 37
EERDKR+A K
Sbjct: 249 EERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/65 (32%), Positives = 25/65 (38%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
HHR E AH HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 55 QAHRS 41
+ H +
Sbjct: 460 EHHHA 464
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 71
HH E H H HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -1
Query: 196 HCAHQXLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 47
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.1 bits (77), Expect = 0.022
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Frame = -1
Query: 244 ACGHHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 68
A HH E H H HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 67 RGAGQAHRSQGRRA 26
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 33.1 bits (72), Expect = 0.091
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
HH P H H HG H H H G G H H P H G
Sbjct: 509 HHHAPAHHGH---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHG 565
Query: 55 QAHRS 41
+ H +
Sbjct: 566 EHHHA 570
Score = 33.1 bits (72), Expect = 0.091
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
HH P H +H HG H H GH G H H HH G G
Sbjct: 567 HHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGV-----HHGHHGAGYG 621
Query: 55 QAHRSQG 35
H G
Sbjct: 622 AHHGHHG 628
Score = 30.7 bits (66), Expect = 0.48
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
HH P H HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 55 QAHRSQG 35
AH G
Sbjct: 690 GAHHEHG 696
Score = 29.9 bits (64), Expect = 0.85
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = -1
Query: 238 GHHRVPRETSRLLRHCAHQXLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 62
GHH H H HG H H H+ GH G H A H HH
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH--GHHGAHHHHA--PHHEHHEHH 643
Query: 61 AGQAHRSQG 35
H S G
Sbjct: 644 GDHHHGSHG 652
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -1
Query: 238 GHHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVH 107
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 59
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 58 GQAHRSQ 38
H +
Sbjct: 515 HHGHHGE 521
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Frame = -1
Query: 190 AHQXLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHHRRGAGQAH 47
AH HG H H H G H G H GH H A H
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Frame = -1
Query: 238 GHHRVPRETSRLLRHCAHQXLHGTHLR--HEVEQRVHNRQG-HEGVHLAAARQGHPPHHR 68
GHH + H H HG H H H+ G H G H HH
Sbjct: 656 GHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH-HGHHDDKENHHH 714
Query: 67 RGAGQAH 47
G H
Sbjct: 715 HGHHSKH 721
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Frame = -1
Query: 208 RLLRHCAHQXLHGT-HLRHEVE-QRVHNRQGHEG-------VHLAAARQGHPPHHRRGAG 56
+L R A LH HL E+ Q+V + H+G + + GH HH GA
Sbjct: 30 KLTRDEARSALHDIEHLAKELHFQKVFDHHAHDGHISLKGFLSFISPHHGHHTHHAHGAH 89
Query: 55 QAH 47
H
Sbjct: 90 PGH 92
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = -1
Query: 247 GACGHHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVH--LAAARQGHPPH 74
G+ G H T L H H HG H H GH G H A H H
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGH---HGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGH 705
Query: 73 H 71
H
Sbjct: 706 H 706
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -1
Query: 196 HCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 35
HC + HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCPGR--HGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -1
Query: 175 HGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 32
HG H RH R GH G +R G P G H GR
Sbjct: 285 HGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 26.6 bits (56), Expect(2) = 1.1
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -1
Query: 196 HC-AHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 71
HC HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 21.4 bits (43), Expect(2) = 1.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 82 PPHHRRGAGQAHRSQGRRA 26
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 48 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 167
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 48 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 167
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 48 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 167
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 48 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 167
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 84 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 173
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 48 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 167
C C P+ C CR C +C C TRC T R C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 89 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVEXLMCTMSKE 205
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 89 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVEXLMCTMSKE 205
L G+EM P + L ++ K P + LMC SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 236 APSCPARDIPAPSTLCTSXTPRDTPSP 156
AP CP PAP+ C P TPSP
Sbjct: 107 APCCPPP--PAPAAPCCPPPPPPTPSP 131
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 139 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
VH+ H+G H R+ H HH G H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146
>U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 10 protein.
Length = 258
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 144 CSTSWRRCVPWSX*CAQCRRSRDVSRGTRWCPHAPSYAFRDHTQVPRLKL 293
C +RC+ CR DV G RW P+ S R T + K+
Sbjct: 54 CGEVGKRCIDDQ---TSCRAETDVFSGMRWAPNGESILLRCCTMHAKNKI 100
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 214 SLAGHDGAHTPQVTPSVIIHKFPDSNLMKSII 309
SL GH G TP+ + H P L+ SI+
Sbjct: 462 SLGGHSGYSTPERSVEGFYHALPQFGLLGSIL 493
>AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical
protein F45C12.7 protein.
Length = 319
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 351 KVNDSIQLDXCNYEDYGL 298
K+N+ I+L+ +YED+GL
Sbjct: 195 KINEEIRLEDVSYEDFGL 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,027,987
Number of Sequences: 27780
Number of extensions: 211290
Number of successful extensions: 710
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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