Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0789.Seq
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.48 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.48 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 218 RDIPAPSTLCTSXTPRDTPSP 156
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -1

Query: 187 HQXLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 71
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 218 RDIPAPSTLCTSXTPRDTPSP 156
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 163 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 29
           ++ E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 160  RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 53
            + + +Q+ H  +  EGV    A       + RGA Q
Sbjct: 1226 QQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQ 1261


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = +1

Query: 184 DVHNVEGAGMSLAGHDGAHTPQVT---PSVIIHKFPDSNLM---KSIIFVVAXV*LDGIV 345
           DVH V GAG  +  HD      +T     VI      S ++    ++ +++    L GIV
Sbjct: 110 DVHGVIGAGHWIGDHDVDKDELITGWSAVVITAAICTSGIVGRTHTVGYIIIGFLLAGIV 169

Query: 346 D--FDKWVWVADG 378
                 W+W   G
Sbjct: 170 QPFLIHWIWTPHG 182


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 207 GSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPR 94
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 207 GSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPR 94
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/44 (22%), Positives = 15/44 (34%)
 Frame = -1

Query: 187  HQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
            H    G  + H      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 211 MSLAGHDGAHTPQVTPSVIIHK 276
           + LAGH G      TP  I+ K
Sbjct: 243 VQLAGHQGNFRAGPTPGTILKK 264


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 211 MSLAGHDGAHTPQVTPSVIIHK 276
           + LAGH G      TP  I+ K
Sbjct: 158 VQLAGHQGNFRAGPTPGTILKK 179


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 211 MSLAGHDGAHTPQVTPSVIIHK 276
           + LAGH G      TP  I+ K
Sbjct: 477 VQLAGHQGNFRAGPTPGTILKK 498


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 108 CTPSCPCRL 134
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 108 CTPSCPCRL 134
           C P C CRL
Sbjct: 67  CAPGCVCRL 75


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 209 PAPSTLCTSXTPRDTPSPRG 150
           P+P+  C S T     SP+G
Sbjct: 745 PSPAEQCASTTTITARSPQG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,184
Number of Sequences: 438
Number of extensions: 2716
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)