Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0789.Seq
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 146 8e-36
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 146 8e-36
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 145 1e-35
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 30 0.59
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 1.4
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 1.8
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 1.8
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 29 1.8
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 1.8
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 28 2.4
At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical ... 28 3.2
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 27 4.2
At3g63100.1 68416.m07087 glycine-rich protein 27 4.2
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 5.5
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 5.5
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila... 27 7.3
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At1g72550.2 68414.m08390 tRNA synthetase beta subunit family pro... 27 7.3
At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative ... 26 9.7
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 26 9.7
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 26 9.7
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 146 bits (353), Expect = 8e-36
Identities = 71/126 (56%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +PYL T+DGRTI PDPLIK ND+I+LD + + V +V G RN GRVG
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I +RE+H GSF+ +HI+ STGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE
Sbjct: 194 VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEAR 253
Query: 54 KRIAAK 37
KR+A++
Sbjct: 254 KRLASQ 259
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 146 bits (353), Expect = 8e-36
Identities = 71/126 (56%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +PYL T+DGRTI PDPLIK ND+I+LD + + V +V G RN GRVG
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I +RE+H GSF+ +HI+ STGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE
Sbjct: 194 VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEAR 253
Query: 54 KRIAAK 37
KR++A+
Sbjct: 254 KRLSAQ 259
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 145 bits (351), Expect = 1e-35
Identities = 71/126 (56%), Positives = 91/126 (72%)
Frame = -2
Query: 414 KNVPYLVTHDGRTIXXPDPLIKVNDSIQLDXCNYEDYGLHQV*VWELVYDHGRRNLGRVG 235
K +PYL T+DGRTI PDPLIK ND+I+LD + + V +V G RN GRVG
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVG 193
Query: 234 TIVSRERHPGSFDIVHIKXSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERD 55
I +RE+H GSF+ +HI+ STGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE
Sbjct: 194 VIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEAR 253
Query: 54 KRIAAK 37
KR+A++
Sbjct: 254 KRLASQ 259
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 187 HQXLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
HQ +HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 187 HQXLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
HQ HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 187 HQXLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 47
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 91 QGHPPHHRRGAGQAHRSQG 35
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 285 VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKXSTGHTFAT 154
V E++ D GRR G + + R + DI+HIK +TF T
Sbjct: 166 VREVIEDEGRRTAG-IFSHFQRPNLETNADIIHIKMLRNNTFVT 208
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 216 RHPGSFDIVHIKXSTGHTFA-TRLNNVFIIGKGTKAYISL 100
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical to
amine acid permease AAP2 [Arabidopsis thaliana]
GI:510236
Length = 493
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 304 IIFVVAXV*LDGIVDFDKWVWVADGAAIMRY 396
I+F VA + L + DFD+ W++ AA+M +
Sbjct: 183 IVFGVAEILLSQVPDFDQIWWISIVAAVMSF 213
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVEXLMCTMSKEPGCL 217
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 4.2
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -1
Query: 241 CGHHRVPRETSRLLRHCAHQXLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 62
CG R + R HC H HG H H GH+ H GH H G
Sbjct: 57 CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101
Query: 61 AGQAHRSQGR 32
G HR GR
Sbjct: 102 HGHGHRRHGR 111
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C++ ++ +LS S+
Sbjct: 247 RVYCPNPLCSSLMSVTKLSNST 268
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C+A ++ ++S S+
Sbjct: 384 RVYCPYPRCSALMSKTKISESA 405
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C++ ++ +LS S+
Sbjct: 257 RVYCPNPRCSSLMSVTKLSNST 278
>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
to thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 420
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 195 CRRSRDVSRGTRWCPHAPSYAFRDHTQVPRLKLDE 299
CR S S R CP A SYAF D T K E
Sbjct: 210 CRPSLYSSIFKRACPRAYSYAFDDGTSTFTCKASE 244
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+ YCP P C+A ++ + LS+S+
Sbjct: 101 RFYCPNPRCSALMSKIELSKST 122
>At1g72550.2 68414.m08390 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 584
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 246 GRVGTIVSRERHPGSFDIVHIKXSTG 169
GR +I+ R +H G+F IVH + +G
Sbjct: 555 GRQASIIVRGKHIGNFGIVHPEFPSG 580
>At3g47950.1 68416.m05228 ATPase, plasma membrane-type, putative /
proton pump, putative strong similarity to P-type
H(+)-transporting ATPase from Nicotiana plumbaginifolia
[SP|Q08435, SP|Q08436], Lycopersicon esculentum
[GI:5901757, SP|P22180], Solanum tuberosum [GI:435003];
contains InterPro accession IPR001757: ATPase, E1-E2
type
Length = 960
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 214 TSRLLRHCAHQXLHGTHLRHEVEQRVH---NRQGHEGVH-LAAARQGHPPHHRRGAG 56
T R+ + Q L+ H + E+E+RVH ++ G+ LA A Q P + AG
Sbjct: 426 THRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQDVPEGRKDSAG 482
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 186 CAQCRRSRDVSRGTRWCPHAPSYA 257
C CR+ D S G C PSYA
Sbjct: 186 CGLCRKEIDWSFGAFTCKRCPSYA 209
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSSAMVRR 82
+VYCP P C+ ++ LS + VRR
Sbjct: 243 RVYCPNPRCSTLMSETELSGLNIGVRR 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,416
Number of Sequences: 28952
Number of extensions: 195892
Number of successful extensions: 618
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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