Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0787.Seq
(507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 5.1
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 27 6.7
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 27 6.7
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88) 27 8.9
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 8.9
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 8.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 147 DVVAVSQAPSPESNPDSPLPVTTM 76
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1
Query: 138 AVSQAPSPESNPDSPLPVTTM 76
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 256 LNILTRNNWRASLXXXXXXXXXXXXYTKIXAVKKLVVAFVRRAVGAP 396
++++ R +WRASL Y K+ AVKKLVV F VG P
Sbjct: 56 MHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.034
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 137 PFLRLPLRNRTLIPRYP 87
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 35.1 bits (77), Expect = 0.034
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +1
Query: 271 RNNWRASLXXXXXXXXXXXXYTKIXAVKKLVVAFVRRAVGAP 396
R +WRASL Y K+ AVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 75 PWLSRVTGNQGSIPEREPEKRLP-----HPRKAAGAQITHSRHGEVVTKNNDTGLLRGLV 239
P R T S PER E+++ PR+ + + R E+ T + + + L+
Sbjct: 183 PAPDRSTSEPTSSPERVVEEQVSPEISQQPRRLSVSSTEEDRGQELTTVRENNPVPKALI 242
Query: 240 IGMSTFKYFNEEQL 281
IG S K NE +L
Sbjct: 243 IGDSMIKGINENRL 256
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +1
Query: 283 RASLXXXXXXXXXXXXYTKIXAVKKLVVAFVRRAVGAP 396
RASL Y K+ AVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 271 RNNWRASLXXXXXXXXXXXXYTKIXAVKKLVVAFVRRAVGAP 396
R ASL Y K+ AVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 156 PSLDVVAVSQAPSPESNPDSPLP 88
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 331 YTKIXAVKKLVVAFVRRAVGAP 396
Y K+ AVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 331 YTKIXAVKKLVVAFVRRAVGAP 396
Y K+ AVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 331 YTKIXAVKKLVVAFVRRAVGAP 396
Y K+ AVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 432 ICSANVSVSPRMRCTDSAAHKCNYELFNRXNFSIRYW-SWNY 310
I S S R+RCT S + KC + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 150 RKAAGAQITHSRHGEVVTKNNDTGLLRGLVIGMSTFKYFNEEQLEG 287
R + + ++H HG T+N +G+ L G + F+E Q G
Sbjct: 673 RSRSTSNLSHGNHGSTTTRNMSSGIQSNLAFGRLS-NGFHENQSFG 717
>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 96 GNQGSIPEREPEKRLPHPRKAA 161
GN+GS + E EK LP P K A
Sbjct: 52 GNEGSEGDGEKEKMLPSPEKKA 73
>SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
Length = 234
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 84 SRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 218
+RVT NQ S ++ RK AQ+T + VT+N ++
Sbjct: 177 ARVTRNQESARVTRKQESARVTRKQVSAQVTRKQESARVTRNQES 221
>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 205
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 435 TICSANVSVSPRMRCTDSAAHKCNYEL 355
T C+ NV S ++C DS CN E+
Sbjct: 157 TECACNVHGSASLQCDDSGVCPCNLEV 183
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 435 TICSANVSVSPRMRCTDSAAHKCNYEL 355
T C+ NV S ++C DS CN E+
Sbjct: 199 TECACNVHGSASLQCDDSGVCPCNLEV 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,160
Number of Sequences: 59808
Number of extensions: 325669
Number of successful extensions: 867
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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