Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0787.Seq
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.5  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 429 CSANVSVSPRMRCTDSAAHKCNYELFNRXNFSIRYWSWNY 310
           C  NV + P     DSA H  N   +N     I    WNY
Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 159 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 55
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 176 GNLRACCLPWMW*PFLRLPLR 114
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 437 RRYAPQTCQYHRGCGAPTARRTNATTSFL 351
           R+  P+TC Y  G G  T  RT+ T + L
Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTTCADL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,142
Number of Sequences: 27780
Number of extensions: 231004
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)