Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0787.Seq
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.4  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.4  
At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical t...    28   4.2  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    27   9.6  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 165 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 64
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 156 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 49
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to
           small ribosomal protein 4 [Arabidopsis thaliana]
           GI:1460051
          Length = 362

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 171 ITHSR--HGEVVTKNNDTGLLRGLVIGMSTFKYFNEEQLEGK 290
           ITH +  HG++++   +  ++RG  I  S +K  + E++ GK
Sbjct: 141 ITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGK 182


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 117 EREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDTGLL 227
           ER   K  P  RK   +    S H ++ T  NDT  L
Sbjct: 271 ERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,733,228
Number of Sequences: 28952
Number of extensions: 217976
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)