Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0786.Seq
(424 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 120 1e-26
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 114 8e-25
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 92 4e-18
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 85 6e-16
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 84 1e-15
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 72 4e-12
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 67 2e-10
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 62 5e-09
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 62 5e-09
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 60 1e-08
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 58 6e-08
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 58 6e-08
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 58 1e-07
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 57 2e-07
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 56 2e-07
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 55 7e-07
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 54 9e-07
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 53 3e-06
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 52 4e-06
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 51 1e-05
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 49 5e-05
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 46 2e-04
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 45 7e-04
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 44 0.001
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 38 0.11
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.34
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.45
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 36 0.45
UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.0... 35 0.79
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 35 0.79
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 35 0.79
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 34 1.0
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 34 1.0
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 34 1.4
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 1.4
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 34 1.4
UniRef50_Q9HCE0 Cluster: UPF0493 protein KIAA1632; n=34; Euteleo... 34 1.4
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 33 1.8
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 33 2.4
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 33 2.4
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 33 3.2
UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1; Co... 33 3.2
UniRef50_UPI00006CB1B8 Cluster: insulysin, putative; n=1; Tetrah... 32 4.2
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 32 4.2
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 32 4.2
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 4.2
UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1; ... 32 5.6
UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=... 32 5.6
UniRef50_Q4A8Y3 Cluster: Glutamyl-tRNA amidotransferase subunit ... 31 7.4
UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus we... 31 7.4
UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellu... 31 7.4
UniRef50_Q290U4 Cluster: GA15861-PA; n=1; Drosophila pseudoobscu... 31 9.7
UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42; Bacter... 31 9.7
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 120 bits (289), Expect = 1e-26
Identities = 51/58 (87%), Positives = 57/58 (98%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
K+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+HRG+RHYWGLRVRGQH
Sbjct: 78 KVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
Score = 85.4 bits (202), Expect = 4e-16
Identities = 38/47 (80%), Positives = 44/47 (93%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
AIKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP Q +
Sbjct: 32 AIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYK 78
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 114 bits (274), Expect = 8e-25
Identities = 48/58 (82%), Positives = 55/58 (94%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
KIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAHRG+RH+WGLRVRGQH
Sbjct: 78 KIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
Score = 79.0 bits (186), Expect = 4e-14
Identities = 35/47 (74%), Positives = 43/47 (91%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
AIKGVGRRY+++VL+KADIDL KRAGE TE+EVE++ITIM NPRQ +
Sbjct: 32 AIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYK 78
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 92.3 bits (219), Expect = 4e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI++HRG+RH+WGL+VRGQH
Sbjct: 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQH 137
Score = 40.3 bits (90), Expect = 0.016
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 262
I+G+GRR++ I+ K ID + RAG TE++ KI ++++P
Sbjct: 35 IRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADP 76
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 85.0 bits (201), Expect = 6e-16
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = -1
Query: 229 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 83.8 bits (198), Expect = 1e-15
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP Q +
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYK 46
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 72.1 bits (169), Expect = 4e-12
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = -1
Query: 226 QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAHRG+RH+WGL V Q
Sbjct: 81 QKGVRDGRCSQVPANGLDNKLREELERLKKIRAHRGLRHFWGLHVHCQ 128
Score = 63.3 bits (147), Expect = 2e-09
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQ 256
A KG +RY+++VL+KA IDL K AGE TE++VE++ITIM NPRQ
Sbjct: 32 ATKGAEQRYAHVVLRKAGIDLTKMAGELTEDKVERVITIMQNPRQ 76
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 66.9 bits (156), Expect = 2e-10
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
+P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH GL+VRGQ
Sbjct: 89 VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 62.1 bits (144), Expect = 5e-09
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
IP W LNR D GK + + + S R DLERL+K R RG+RH+ L+VRGQH
Sbjct: 80 IPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCERGVRHHHNLKVRGQH 136
Score = 53.2 bits (122), Expect = 2e-06
Identities = 21/42 (50%), Positives = 33/42 (78%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 262
IKG+GRR++N+ LKKA+ID+ KRAGE T E + ++ ++ +P
Sbjct: 34 IKGIGRRFANVALKKANIDVHKRAGELTAAEEDALMKVLEDP 75
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 62.1 bits (144), Expect = 5e-09
Identities = 26/64 (40%), Positives = 46/64 (71%)
Frame = -1
Query: 274 HVES*AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLR 95
+VE+ +P+W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G +
Sbjct: 89 YVEAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKK 148
Query: 94 VRGQ 83
VRGQ
Sbjct: 149 VRGQ 152
Score = 38.7 bits (86), Expect = 0.048
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 283
+KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 52 LKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKL 86
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 60.5 bits (140), Expect = 1e-08
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = -1
Query: 280 HYHVES*AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 101
+Y + +++P+W NR+KD G L +S+L +R D+ER KKI++ RG+RH G
Sbjct: 67 NYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLG 126
Query: 100 LRVRGQ 83
L+VRGQ
Sbjct: 127 LKVRGQ 132
Score = 35.9 bits (79), Expect = 0.34
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = -2
Query: 393 AAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQL 253
A +KG+G + ++ K +D D+R GE ++E+++KI +++ + L
Sbjct: 29 AMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKIL 75
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 58.4 bits (135), Expect = 6e-08
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
+IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH GL+VRGQ
Sbjct: 80 QIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRHGLGLKVRGQ 136
Score = 43.6 bits (98), Expect = 0.002
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = -2
Query: 405 YVCDAAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQ 256
Y+ I G+GRR++ V+++A +D +RAG T +E E I++I+ NP +
Sbjct: 29 YLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEELIVSIIQNPTE 78
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 58.4 bits (135), Expect = 6e-08
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH GL RGQ
Sbjct: 76 IPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131
Score = 37.5 bits (83), Expect = 0.11
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 262
I GVG + +++ A +D +K AG TEEEV+KI ++++P
Sbjct: 30 IYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADP 71
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 57.6 bits (133), Expect = 1e-07
Identities = 26/63 (41%), Positives = 40/63 (63%)
Frame = -1
Query: 271 VES*AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 92
VE+ A +P+W N QKD G+ + T ++L R+D+ R+K I ++RG+RH G +V
Sbjct: 82 VENFADDVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKV 141
Query: 91 RGQ 83
RGQ
Sbjct: 142 RGQ 144
Score = 31.5 bits (68), Expect = 7.4
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 265
+ G+G R + I+ +KAD+D G+ ++ +E+++ + N
Sbjct: 44 LNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVEN 84
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Frame = -1
Query: 271 VES*AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 92
+++ +P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH G +V
Sbjct: 131 IDNLEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKV 190
Query: 91 RGQ 83
RGQ
Sbjct: 191 RGQ 193
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 56.4 bits (130), Expect = 2e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -1
Query: 247 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH L+ RGQH
Sbjct: 86 PSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHLSRLKTRGQH 141
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 54.8 bits (126), Expect = 7e-07
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = -1
Query: 247 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +GL+VRGQ
Sbjct: 122 PTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 54.4 bits (125), Expect = 9e-07
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = -1
Query: 247 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+VRGQ
Sbjct: 75 PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 52.8 bits (121), Expect = 3e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH L RGQ
Sbjct: 76 IPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131
Score = 34.3 bits (75), Expect = 1.0
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 262
+KG+GR + V++ ++D ++AG +E+V KI +++ +P
Sbjct: 30 MKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDP 71
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 52.4 bits (120), Expect = 4e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = -1
Query: 259 AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
+V IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R GL+VRGQ
Sbjct: 77 SVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135
Score = 38.7 bits (86), Expect = 0.048
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNP 262
I+G+G R + + K+ IDL KRAGE E+E+++I + +P
Sbjct: 34 IRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDP 75
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 50.8 bits (116), Expect = 1e-05
Identities = 22/45 (48%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Frame = -1
Query: 223 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRG--MRHYWGLR 95
+D+ +GK ++T++ L++KLREDLER+KKI+ + +RH+WGLR
Sbjct: 81 RDLKNGKNYEVTTNELETKLREDLERIKKIKYSQWLCLRHHWGLR 125
Score = 41.9 bits (94), Expect = 0.005
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN-PRQLR 250
+IKG+GRR++ + K ++L KRAGE T+EE KI ++ P+ +R
Sbjct: 34 SIKGIGRRFAIQICKVLRLNLTKRAGELTDEEAHKITEVIKMVPQYIR 81
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 48.8 bits (111), Expect = 5e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
+P + LNR+ D+ GK L ++L +R+ + R +R RG RH +G +VRGQH
Sbjct: 90 VPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGYRHQYGQKVRGQH 146
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 46.4 bits (105), Expect = 2e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQL 191
KIPDWFLNRQKD+ DGKYSQ+
Sbjct: 8 KIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 44.8 bits (101), Expect = 7e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -1
Query: 250 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
IP W NR++D GK L ++ + D++R +I + RG RH GL VRGQ
Sbjct: 80 IPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 44.0 bits (99), Expect = 0.001
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +2
Query: 80 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPV 244
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPI 98
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 37.5 bits (83), Expect = 0.11
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -2
Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 283
I G+GR S +LK ID +KR G+ T+EE+ KI
Sbjct: 22 IYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI 56
Score = 32.7 bits (71), Expect = 3.2
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 178 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
L S++ ++ RL +I +RG+RH GL VRGQ
Sbjct: 70 LRSEVERNIRRLIEIGCYRGIRHKLGLPVRGQ 101
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 35.9 bits (79), Expect = 0.34
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = -1
Query: 184 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
+ L +L++++ER++ + ++RG RH GL VRGQ+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 35.5 bits (78), Expect = 0.45
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 190 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
T S++ R++++RL I ++RG RH GL VRGQ
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 35.5 bits (78), Expect = 0.45
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = -1
Query: 190 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
T +L +++ +++RL +I+ +RG+RH GL VRGQ
Sbjct: 78 TEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVRGQ 113
>UniRef50_Q849N3 Cluster: Putative uncharacterized protein pSV2.07;
n=1; Streptomyces violaceoruber|Rep: Putative
uncharacterized protein pSV2.07 - Streptomyces
violaceoruber
Length = 652
Score = 34.7 bits (76), Expect = 0.79
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 200 VFTINNILLPI*EPVWYLNCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLE 364
V T+N + +P WY + ++ I+ TS S+H+PA+ S ++A + +E
Sbjct: 281 VTTLNTAQAHLDQPSWYNPADALNRLLEIYLTSRSIHAPAKDSTGLTALISPAVE 335
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 34.7 bits (76), Expect = 0.79
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -1
Query: 184 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 34.7 bits (76), Expect = 0.79
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -1
Query: 184 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 34.3 bits (75), Expect = 1.0
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1
Query: 169 KLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
K RE+++RL +I ++RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 34.3 bits (75), Expect = 1.0
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -1
Query: 184 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
++L ++ +D++RLK+ +RG RH GL VRGQ
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 33.9 bits (74), Expect = 1.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 193 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
L +L L D+ RL++I +RG+RH L VRGQ
Sbjct: 65 LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRGQ 101
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 1.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -1
Query: 157 DLERLKKIRAHRGMRHYWGLRVRGQH 80
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 33.9 bits (74), Expect = 1.4
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 235 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
LN + +D Y +L +++ ++++LK + +RG+RH GL VRGQ
Sbjct: 53 LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQ 101
>UniRef50_Q9HCE0 Cluster: UPF0493 protein KIAA1632; n=34;
Euteleostomi|Rep: UPF0493 protein KIAA1632 - Homo sapiens
(Human)
Length = 2579
Score = 33.9 bits (74), Expect = 1.4
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Frame = -2
Query: 303 EEEVEKIIT--IMSNP----RQLRYQTGS*IGKRILLMVNTAS*PPPTWIQNSVKIWRGS 142
E+E+ K++ I+ NP Q R+ S + +L+M+N A+ P +++ S++ W G
Sbjct: 2239 EQEMSKLLDDIIVFNPPDMDSQTRHMALSSLFMEVLMMMNNATIPTAEFLRGSIRTWIGQ 2298
Query: 141 RRFALTEGCDITGAFVCVVSTLRLLAGEEE-LLVYQRRSKLNK 16
+ L +T A + S + E + Y + S LN+
Sbjct: 2299 KMHGLVVLPLLTAACQSLASVRHMAETTEACITAYFKESPLNQ 2341
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 33.5 bits (73), Expect = 1.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 199 SQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 33.1 bits (72), Expect = 2.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 193 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
L S L +++RL I+++RG+RH +GL V GQ
Sbjct: 65 LIESELRKNQTYNIKRLLDIKSYRGLRHAYGLPVHGQ 101
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 33.1 bits (72), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 184 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
S+L K+ D+ER +K ++ G RH G+ V+GQ
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQ 103
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 32.7 bits (71), Expect = 3.2
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -1
Query: 178 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
L +++ + ERL KI ++RG RH+ GL RGQ
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQ 103
>UniRef50_Q47VK1 Cluster: LPS-assembly protein precursor; n=1;
Colwellia psychrerythraea 34H|Rep: LPS-assembly protein
precursor - Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) (Vibriopsychroerythus)
Length = 771
Score = 32.7 bits (71), Expect = 3.2
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -1
Query: 277 YHVES*---AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLER-LKKIRAHRGMRH 110
YHVE+ + P WFLN + ++ Y Q + + S L E ++R L K+R H G+
Sbjct: 424 YHVEAGFTFPITRPSWFLNSEVKLMHTYYQQ-DNISAGSSLEETVDRTLPKVRIHAGVNF 482
Query: 109 YWGLRVRGQ 83
L GQ
Sbjct: 483 DRQLLAFGQ 491
>UniRef50_UPI00006CB1B8 Cluster: insulysin, putative; n=1;
Tetrahymena thermophila SB210|Rep: insulysin, putative -
Tetrahymena thermophila SB210
Length = 969
Score = 32.3 bits (70), Expect = 4.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 242 VWYLNCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLE 364
VW + C +I + F S V P LS+ + AF+ MLE
Sbjct: 801 VWSMTCAERTVIYVYFQIQSDVKPPQYLSQQIEAFVDEMLE 841
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 32.3 bits (70), Expect = 4.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 274 HVES*AVKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 140
H E KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 9 HKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 32.3 bits (70), Expect = 4.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -1
Query: 223 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
++ +D Y+ +L ++ +++RL + +RG+RH GL VRGQ
Sbjct: 57 REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRGQ 101
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 4.2
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 154 LERLKKIRAHRGMRHYWGLRVRGQ 83
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
>UniRef50_A3IUX9 Cluster: Putative uncharacterized protein; n=1;
Cyanothece sp. CCY 0110|Rep: Putative uncharacterized
protein - Cyanothece sp. CCY 0110
Length = 227
Score = 31.9 bits (69), Expect = 5.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 247 PDWFLNRQK--DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
P W +++ ++ + + L D+ L DL+ K + A G+R YW + VRG+
Sbjct: 109 PTWEAGQRRYINLAEVRVPDLVGEVGDTTLATDLDEKKHLYAKLGIREYWVIDVRGK 165
>UniRef50_P15758 Cluster: Mitochondrial ribosomal protein S13; n=4;
Magnoliophyta|Rep: Mitochondrial ribosomal protein S13 -
Oenothera bertiana (Bertero's evening primrose)
Length = 114
Score = 31.9 bits (69), Expect = 5.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 163 REDLERLKKIRAHRGMRHYWGLRVRGQ 83
R D+ER I +RG+RH GL +RGQ
Sbjct: 73 RADIERFISISCYRGIRHQDGLPLRGQ 99
>UniRef50_Q4A8Y3 Cluster: Glutamyl-tRNA amidotransferase subunit B;
n=3; Mycoplasma hyopneumoniae|Rep: Glutamyl-tRNA
amidotransferase subunit B - Mycoplasma hyopneumoniae
(strain 7448)
Length = 466
Score = 31.5 bits (68), Expect = 7.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 259 PRIRHDSDNFFNLFFCAFASTLVKIN 336
P +R +++ FFNLF A+ TL KIN
Sbjct: 28 PNLRGEANQFFNLFDLAYLGTLPKIN 53
>UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Ribosomal protein S13 -
Bacillus weihenstephanensis KBAB4
Length = 75
Score = 31.5 bits (68), Expect = 7.4
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -1
Query: 235 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 86
L R +DI+D +L ++ +++RL +I ++RG+RH GL VRG
Sbjct: 29 LGRIRDIID---RIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRG 75
>UniRef50_Q2JL76 Cluster: 30S ribosomal protein S13; n=212; cellular
organisms|Rep: 30S ribosomal protein S13 - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 127
Score = 31.5 bits (68), Expect = 7.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 223 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
+ +V+G+Y +L + +++RL I +RG RH GL VRGQ
Sbjct: 57 RTVVEGEYQ--VEGDLRRQEAMNIKRLIDIGTYRGRRHRLGLPVRGQ 101
>UniRef50_Q290U4 Cluster: GA15861-PA; n=1; Drosophila
pseudoobscura|Rep: GA15861-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 354
Score = 31.1 bits (67), Expect = 9.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 241 WFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 122
WF+N K + + K + N SKL + E+LK + HR
Sbjct: 201 WFMNNLKHLKNLKQLTIRGKNYPSKLLDIAEKLKAVGRHR 240
>UniRef50_Q8FS35 Cluster: 30S ribosomal protein S13; n=42;
Bacteria|Rep: 30S ribosomal protein S13 -
Corynebacterium efficiens
Length = 122
Score = 31.1 bits (67), Expect = 9.7
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = -1
Query: 223 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 83
+D+++ + +L +++ D+ R +I +++G+RH GL VRGQ
Sbjct: 57 RDVIEATWK--VEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVRGQ 101
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,378,801
Number of Sequences: 1657284
Number of extensions: 7556847
Number of successful extensions: 21552
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 21106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21547
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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