Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0786.Seq
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    24   0.70 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   6.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   8.6  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 288 FQPLLLCIRQHACQDQCRLF 347
           F  +L  + +HAC + CR+F
Sbjct: 266 FNTVLELMPKHACSEYCRVF 285


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 345 KADIDLDKRAGECTEEEVEK 286
           K DI  DK+A +    EVEK
Sbjct: 77  KKDIRADKKALQKLRREVEK 96


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 214 VDGKYSQLTSSN 179
           VDGKY+ +T  N
Sbjct: 129 VDGKYNMITCPN 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,121
Number of Sequences: 336
Number of extensions: 2015
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)