Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0786.Seq
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    96   2e-21
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    96   2e-21
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    34   0.010
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   2.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   3.7  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   6.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   6.4  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.5  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    24   8.5  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 44/58 (75%), Positives = 49/58 (84%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
           KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 78  KIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135



 Score = 72.5 bits (170), Expect = 2e-14
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = -2

Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
           IKGVGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q +
Sbjct: 33  IKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFK 78


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 44/58 (75%), Positives = 49/58 (84%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
           KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRVRGQH
Sbjct: 78  KIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135



 Score = 72.5 bits (170), Expect = 2e-14
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = -2

Query: 387 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
           IKGVGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q +
Sbjct: 33  IKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFK 78


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 157 DLERLKKIRAHRGMRHYWGLRVRGQH 80
           D+ RL  IR +RGMRH  GL V GQ+
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPVNGQN 101


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 271 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 381
           +++D  F+ F C F+     +  G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 355 NVGV-PPANTFDSRIANITLRLPS 423
           N GV PPA+TF S  +N T  LPS
Sbjct: 282 NTGVLPPASTFPSYNSNFTGFLPS 305


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 188 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 45
           L  L FK+       + D   +R AT +  S  W A+  YWQ     W
Sbjct: 43  LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 256 VKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLER 146
           +KI DW+ +   D++  K  QL SS    +   DL R
Sbjct: 771 IKICDWYQSPSSDVLLSKPLQLNSSEEMEQQCIDLSR 807


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 364 VPPANTFDSRIANITLRL 417
           VPP  TF+S  AN+T ++
Sbjct: 373 VPPNTTFESPFANVTSKI 390


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 226 AYLGTSLVS*LPRIRHDSDNFFNLFFCAFAS--TLVK---INVGFFENNV 360
           AYLG  LVS +P +  + + F  L +  F    +L+    IN  FF NN+
Sbjct: 20  AYLGGRLVSKIPAVYSNDNKFVFLTYDTFIGIFSLITGDCINRIFFPNNL 69


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 242 VWYLNCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 373
           +++  C  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 54  IYFCYCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 336 IDLDKRAGECTEEEVEKIIT 277
           +DLDKR G  ++EE + +IT
Sbjct: 37  VDLDKRWGIMSQEEKDGLIT 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,091
Number of Sequences: 5004
Number of extensions: 31963
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)