Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0786.Seq
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 105 1e-23
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 105 1e-23
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 105 1e-23
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 2e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.004
03_01_0404 + 3138624-3140096 31 0.38
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 1.5
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 1.5
03_01_0595 + 4391877-4392005,4392155-4392287,4392402-4392490,439... 27 6.2
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 8.2
08_02_1350 - 26312275-26313613,26314833-26315110 27 8.2
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 105 bits (253), Expect = 1e-23
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 74 KVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131
Score = 71.7 bits (168), Expect = 2e-13
Identities = 29/47 (61%), Positives = 42/47 (89%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
+IKG+GRR+SNI KKADID++KRAGE T EE+E+++T+++NPRQ +
Sbjct: 28 SIKGIGRRFSNIACKKADIDMNKRAGELTPEELERLMTVVANPRQFK 74
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 105 bits (253), Expect = 1e-23
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 94 KVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 16/63 (25%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKR----------------AGECTEEEVEKIITIMSNPR 259
+IKGVGRR+SNI KKADID++KR AGE T EE+E+++T+++NPR
Sbjct: 32 SIKGVGRRFSNIACKKADIDMNKRSGVVCYYLAVHNYVEWAGELTPEELERLMTVVANPR 91
Query: 258 QLR 250
Q +
Sbjct: 92 QFK 94
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 105 bits (253), Expect = 1e-23
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = -1
Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 96 KVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
Score = 54.0 bits (124), Expect = 5e-08
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 18/65 (27%)
Frame = -2
Query: 390 AIKGVGRRYSNIVLKKADIDLDKR------------------AGECTEEEVEKIITIMSN 265
+IKGVGRR+SNI KKADID++KR AGE T EE+E+++T+++N
Sbjct: 32 SIKGVGRRFSNIACKKADIDMNKRQEPPPPPSRRQISVMVGGAGELTPEELERLMTVVAN 91
Query: 264 PRQLR 250
PRQ +
Sbjct: 92 PRQFK 96
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 2e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = -1
Query: 241 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -1
Query: 163 REDLERLKKIRAHRGMRHYWGLRVRGQ 83
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 211 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 113
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 150 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 40
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 153 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 46
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>03_01_0595 +
4391877-4392005,4392155-4392287,4392402-4392490,
4392639-4392696,4393182-4393337,4393556-4393704,
4394208-4394327,4394513-4394726,4394813-4394915,
4395022-4395069,4395267-4395312,4395647-4395834,
4395943-4396105,4396227-4396292
Length = 553
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -2
Query: 141 RRFALTEGCDITG---AFVCVVSTLRLLAGEE--ELLVYQRRSKL 22
+ FALT+G ITG F V L+LL +E E+ +++ KL
Sbjct: 329 KHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKL 373
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 330 LDKRA-GECTEEEVEKIITIMSNPRQL 253
+DK A G TEEEV++IIT+ ++ +L
Sbjct: 275 VDKNADGRITEEEVKEIITLSASANKL 301
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 173 IQVGGGQLAVFTINNILLPI*EPVWYLNCLGFDM 274
+ +G G++ + T N I E WY GFDM
Sbjct: 150 LTIGEGKVIITTDNLIKFSTDEVAWYPGSAGFDM 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,161
Number of Sequences: 37544
Number of extensions: 215835
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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