Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0786.Seq
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              113   8e-26
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               27   4.8  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  113 bits (271), Expect = 8e-26
 Identities = 48/58 (82%), Positives = 54/58 (93%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
           KIPDWFLNRQKD  DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHYWGLRVRGQH
Sbjct: 78  KIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHYWGLRVRGQH 135



 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = -2

Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
           +IKGVGRRY+NIV KKADID++KRAGE TE+EVE+++TIM NPRQ +
Sbjct: 32  SIKGVGRRYANIVCKKADIDMNKRAGELTEDEVERVVTIMQNPRQYK 78


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 125
           K PD  LN  KD  +GK    T+  + ++L  D ++ K  R+H
Sbjct: 661 KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -1

Query: 253  KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 113
            K+  W L+     V+ KY +  S + + + LRE+LE +KK+R   G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 235 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 140
           L R+K + + KY +   +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -1

Query: 196 QLTSS--NLDSKLREDLERLKKI 134
           QLTS   N+D K+RE LE++KK+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKL 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,958
Number of Sequences: 59808
Number of extensions: 237586
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)