Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0786.Seq
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   106   6e-24
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.45 
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    26   9.7  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  106 bits (255), Expect = 6e-24
 Identities = 46/58 (79%), Positives = 52/58 (89%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 80
           KIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 78  KIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135



 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/47 (59%), Positives = 39/47 (82%)
 Frame = -2

Query: 390 AIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQLR 250
           AIKGVGRR++ +  +KAD+D++KRAGE TEE+ +KI+TIM NP Q +
Sbjct: 32  AIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKIVTIMQNPSQYK 78


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 162 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 28
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 VGFFENNVGVPPANTFDSRIANITLRLP 420
           VG F N +GVPPAN  DS I   +   P
Sbjct: 268 VGGFNNQLGVPPAN-LDSSICRSSTGKP 294


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 212 NNILLPI*EPVWYLNCLGFDMIVII 286
           NN LL      W+  CLGF++++I+
Sbjct: 199 NNFLLMFNTFFWFSICLGFNLVLIV 223


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 122
           + PD++ N   D+V+G +     S+ D+    D E  +K  A R
Sbjct: 730 RAPDFYTNNAIDLVEGHWHAADESDHDNLKASDEENEQKSAAAR 773


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 122
           + PD++ N   D+V+G +     S+ D+    D E  +K  A R
Sbjct: 730 RAPDFYTNNAIDLVEGHWHAADESDHDNLKASDEENEQKSAAAR 773


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,418
Number of Sequences: 27780
Number of extensions: 182634
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)