Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0786.Seq
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    27   0.11 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   0.61 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.81 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.81 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 253 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLRED-LERLKKI 134
           KI  WFL++ K+I+D  Y  L +++   +L  D L R K+I
Sbjct: 275 KIDKWFLHKMKNIID-YYLVLENTDHTKQLSHDVLLRAKQI 314


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +2

Query: 248 YLNCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLI 388
           +++ +G  M+V IF ++ S+ +P+ L     A    ++ +    P++
Sbjct: 64  FVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMV 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 226  QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 128
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1781 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1813


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 226  QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRA 128
            + D  +    QLTSS  +S  + D  +LK IRA
Sbjct: 1777 ESDESESDPDQLTSSRTESSNQLDAGKLKHIRA 1809


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 248 YLNCLGFDMIVIIFSTSSSVHSPARL 325
           +++ +G  M+V IF ++ S+ +P+ L
Sbjct: 30  FVSVMGNGMVVYIFLSTKSLRTPSNL 55


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 378 VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITI 274
           +G+R S  V         K A   T +E+EKI T+
Sbjct: 3   LGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTV 37


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 396 DAAIKGVGRRYSNIVLKKADIDLDKRAGECTEE-EVEKII 280
           +A  KGV  R+ N+V K  D ++ K   +   E +VE+I+
Sbjct: 548 EANKKGVSLRFYNVVYKLID-NIKKEIYDILPEVDVEEIL 586


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 330 DQCRLF*EQCWS 365
           D+C    EQCWS
Sbjct: 829 DECWRLMEQCWS 840


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 330 DQCRLF*EQCWS 365
           D+C    EQCWS
Sbjct: 867 DECWRLMEQCWS 878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,595
Number of Sequences: 438
Number of extensions: 2143
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)