Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0785.Seq
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    82   4e-17
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   1.5  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    27   1.5  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   6.2  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    24   8.2  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 81.8 bits (193), Expect = 4e-17
 Identities = 39/54 (72%), Positives = 45/54 (83%)
 Frame = -1

Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
           P I+G E YN+A  VQ++LQ+YKS QDIIAILGMDELSE  KLTV RARK+QRF
Sbjct: 406 PRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRF 459



 Score = 77.8 bits (183), Expect = 6e-16
 Identities = 36/61 (59%), Positives = 47/61 (77%)
 Frame = -3

Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
           SQPF VAEVFTG  G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A
Sbjct: 461 SQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIA 520

Query: 73  K 71
           +
Sbjct: 521 Q 521


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 168 LENPLIVSSSGTSLPACPVNTSATWKGCEGTSEFYVHVPLSTW 296
           L  PLI   +G   PA PVN  A W G      +Y+    + W
Sbjct: 673 LNGPLIFGGTGYIPPATPVNYLA-WSGIGLFFNYYLKKIFADW 714


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 417 PNIIGAEXYN--VARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRFPHNL 244
           P  +G   YN  VA+ V+  L  YK   D++ + G +E +  +K  +   + I   P+ L
Sbjct: 74  PLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINN-PYKL 132


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 198 GTSLPACPVNTSATWKGCEGTSEFYVHVPLSTWLLQTTRP 317
           GTS  +C  NT   + GC   SE+ V   +S   ++   P
Sbjct: 131 GTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAP 170


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 265 SEVPSQPFQVAEVFTGHAGKLVPLEETI 182
           SE P++PF       G AG L P   TI
Sbjct: 122 SETPTKPFTATTAIAGSAGSL-PRNTTI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,308
Number of Sequences: 5004
Number of extensions: 32408
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)