Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0785.Seq
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229     35   0.023
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   2.0  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    28   3.5  
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    28   3.5  
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124...    27   4.6  
08_02_1354 - 26337628-26338540,26339638-26339981                       27   4.6  
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111...    27   8.0  

>09_06_0062 - 20614443-20615037,20615720-20615842,20617967-20618229
          Length = 326

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +3

Query: 93  ATTSSIGPTM*NATSGK*S*SPARILENPLI----VSSSGTSLPACPVNTSATWKGCEGT 260
           ATTS    T  ++ SG+ +   +R L++ ++    VS+ G S P    NT++T  G   +
Sbjct: 178 ATTSQSTVTAESSKSGEATRQQSRQLDDAVVRDMSVSAGGDSPPESSTNTASTAGGSSSS 237

Query: 261 SEFYVHVPLSTWLLQ 305
           S  +   PL  WLL+
Sbjct: 238 SSSHHQDPLVKWLLE 252


>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
            571635-571885,572018-572128,572209-572320,572626-572716,
            573168-573507,573678-573900,573946-574204,574274-574481,
            574572-574622,574712-574870,574956-575120,575322-575399,
            575732-576031,576107-576259,576871-576918,577019-577188,
            577738-577852,578462-578623,578789-578893,578969-579199,
            579277-579410,579484-579738,579822-580110,580214-580306,
            580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 177  PLIVSSSGTSLPACPVNTSATWKGCEGT-SEFYVHVPLSTWLLQTTRPYPK 326
            PL +S++ TSLP+CP + +  ++  +    E  V   + T   Q  RP P+
Sbjct: 1588 PLNISNTNTSLPSCPQDAARVYQDFKTVLREDTVDYGMYTVSAQKKRPTPR 1638


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 181 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 89
           KG  +++AG   + H     FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195


>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
            31343927-31344122,31344419-31344602,31344984-31345147,
            31345454-31345981,31346530-31346630,31347619-31347634,
            31347834-31347941,31348028-31348078,31349059-31349100,
            31349442-31349541,31350039-31350256,31350367-31350807,
            31350916-31351043,31351131-31351992
          Length = 1288

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 98   NLLNRSNHVECYFWQMIIVPC*NFGESFDSFLKWY*FTRMSSEHL 232
            N +NR NH++ +FW + ++   NF  ++  +  WY +    S H+
Sbjct: 1240 NNINR-NHLDLFFWLLAVLSFLNF-LNYLFWASWYKYKPQQSAHV 1282


>09_01_0087 +
           1245890-1246565,1247409-1247484,1247774-1247893,
           1248927-1249002,1250767-1250835,1251019-1251099,
           1251298-1251369,1251600-1251692,1251904-1252083,
           1252558-1252641,1252729-1252872,1253089-1253178,
           1255982-1256064,1256140-1256421,1256722-1256959,
           1258307-1258957
          Length = 1004

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 338 TLLLFWVWTSCLKK 297
           +LLLFW W  CLK+
Sbjct: 277 SLLLFWYWEDCLKQ 290


>08_02_1354 - 26337628-26338540,26339638-26339981
          Length = 418

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = -3

Query: 262 EVPSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDY 149
           E+PS P  VA V TGH G  V L E I G  K+   DY
Sbjct: 237 ELPSDPRAVAVVRTGHDGSRVILGE-ISG-HKLWKKDY 272


>08_02_0967 -
           23110154-23110240,23110620-23110673,23111010-23111177,
           23111432-23111534,23111664-23111988,23112091-23112181
          Length = 275

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 278 VHVKFRGSLTTFPSS*GVHWTCG*TSTT*GNYQ 180
           V+ ++ GSLTT P + GV WT      T   YQ
Sbjct: 205 VYYRYMGSLTTPPCTQGVVWTIVKRVRTVSRYQ 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,597
Number of Sequences: 37544
Number of extensions: 196424
Number of successful extensions: 450
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)