Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0785.Seq
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               103   4e-23
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 28   2.7  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     27   6.2  
SB_39426| Best HMM Match : C4 (HMM E-Value=0)                          27   6.2  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        27   8.2  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  103 bits (248), Expect = 4e-23
 Identities = 48/61 (78%), Positives = 53/61 (86%)
 Frame = -3

Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
           SQPF  AEVFTGH GKLVPL+ETI GF+KIL G+ DHLPEVAFYM+GPIEE VAKAD LA
Sbjct: 385 SQPFVTAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVAFYMIGPIEEAVAKADRLA 444

Query: 73  K 71
           +
Sbjct: 445 E 445



 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 45/54 (83%), Positives = 49/54 (90%)
 Frame = -1

Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
           PNI+G E Y +ARGVQKILQDYKS QDIIAILGMDELSE+ KLTVARARKIQ+F
Sbjct: 330 PNIVGTEHYEIARGVQKILQDYKSLQDIIAILGMDELSEDDKLTVARARKIQKF 383


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -1

Query: 375 VQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQ 262
           V++ILQ+ +   +I+ ++G   L+E  K+T+  A+ I+
Sbjct: 337 VKEILQEEEDLSEIVQLVGKGSLAESDKITLEVAKLIK 374


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 374 FRKF-FRTTNPCRTLLLFWVWTSCLKKPS*QWHVHVKF 264
           FRK+ F+  NPCR L +F    S  +     W VH K+
Sbjct: 198 FRKYGFKVKNPCRILRIFHNHCSQYR----DWEVHKKY 231


>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
          Length = 188

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 180 LIVSSSGTSLPACPVNTSATWKG 248
           + V S  T+LP CP   S+ W G
Sbjct: 37  MAVHSQSTTLPTCPGGWSSLWSG 59


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 270 YVHV---PLSTWLLQTTRPYPK*Q*CPAXICSPEEFSELHV 383
           YVH    PLST     T+ YP  Q CP  +C+P     L++
Sbjct: 649 YVHQTLSPLSTLPSMYTKLYPNPQPCP--VCTPNSIQTLNL 687


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,103,095
Number of Sequences: 59808
Number of extensions: 233365
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)