Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0785.Seq
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    94   3e-20
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = -1

Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
           PN++G   Y++ARGVQKILQDYKS QDIIAILGMDELSEE KLTV+RARKIQRF
Sbjct: 419 PNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRF 472



 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 44/61 (72%), Positives = 50/61 (81%)
 Frame = -3

Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
           SQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V  KA+ LA
Sbjct: 474 SQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEELA 533

Query: 73  K 71
           K
Sbjct: 534 K 534


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 370 ENSSGLQIXAGHYCYFG 320
           ENS+G +  AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
           protein C41C4.3 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 226 FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAF 125
           F   + KL+ L       S I AG +DH  E+ F
Sbjct: 361 FLSKSSKLISLTLQCNSISSIAAGAFDHFTELQF 394


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 389 MLHVEFRKFFRTTNPCRTLLLFWVWTSCLKKPS*QWH 279
           +L ++ R+     N   T+L+ W++ +C   P   WH
Sbjct: 123 VLPMQARQLCSRRNVLITVLVDWIFVACFASPYAVWH 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,218,944
Number of Sequences: 27780
Number of extensions: 178548
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)