Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0785.Seq
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 177 PLIVSSSGTSLPACPVNTSATWKGCEGTSEFYV 275
           P+++  S    P C ++ + T+     +  FYV
Sbjct: 171 PVVLDDSKEEHPTCALDLTPTYAVVSSSISFYV 203


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 268 FTCTCHCQLGFFRQLVH-TQNSNNVLXGFVVLKNFLNSTCNIVXLS 402
           +T T + ++     LV  ++N N       V KNF N  C  + L+
Sbjct: 72  WTITSYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYCGNITLN 117


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 355 VLKNFLNSTCNI 390
           +++N LNSTC++
Sbjct: 340 IVRNHLNSTCSV 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,528
Number of Sequences: 438
Number of extensions: 2199
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)