Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0785.Seq
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 91 2e-19
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 91 2e-19
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 91 2e-19
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 30 0.72
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 30 0.72
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 28 2.2
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 27 3.8
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 27 3.8
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 3.8
At3g48280.1 68416.m05269 cytochrome P450, putative nearly identi... 27 5.1
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei... 27 5.1
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei... 27 5.1
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 27 6.7
At1g36060.1 68414.m04481 AP2 domain-containing transcription fac... 27 6.7
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 91.5 bits (217), Expect = 2e-19
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -1
Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
P+I+G E YN ARGVQK+LQ+YK+ QDIIAILGMDELSE+ KLTVARARKIQRF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRF 490
Score = 77.4 bits (182), Expect = 4e-15
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = -3
Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
SQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKA+ +A
Sbjct: 492 SQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIA 551
Query: 73 KNA 65
K +
Sbjct: 552 KES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 91.5 bits (217), Expect = 2e-19
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -1
Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
P+I+G E YN ARGVQK+LQ+YK+ QDIIAILGMDELSE+ KLTVARARKIQRF
Sbjct: 440 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRF 493
Score = 77.4 bits (182), Expect = 4e-15
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = -3
Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
SQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKA+ +A
Sbjct: 495 SQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIA 554
Query: 73 KNA 65
K +
Sbjct: 555 KES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 91.5 bits (217), Expect = 2e-19
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = -1
Query: 417 PNIIGAEXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQRF 256
P+I+G E YN ARGVQK+LQ+YK+ QDIIAILGMDELSE+ KLTVARARKIQRF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRF 490
Score = 77.4 bits (182), Expect = 4e-15
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = -3
Query: 253 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 74
SQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKA+ +A
Sbjct: 492 SQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIA 551
Query: 73 KNA 65
K +
Sbjct: 552 KES 554
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (CKI1)
identical to GB:D87545
Length = 1122
Score = 29.9 bits (64), Expect = 0.72
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 399 EXYNVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTV 283
+ Y R ++K+ + Y IIA+ G D SEEA+ T+
Sbjct: 1057 DGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI 1095
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 29.9 bits (64), Expect = 0.72
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 298 FFRQLVHTQNSNNVLXGFVVLKNFLNST 381
+FR ++H ++ +NV+ F + KN L++T
Sbjct: 460 YFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 316 HTQNSNNVLXGFVVLKNFLNSTCNIVXLSSNNI 414
HTQ+SNN+ + + N +NS+ ++ L + I
Sbjct: 384 HTQSSNNITSYIIFMDNLINSSQDVSYLHHDGI 416
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -3
Query: 259 VPSQPFQVAEV----FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVV 95
+PS+ F ++E F GH G+++ L + KGF +L+ D V + VG +E +
Sbjct: 344 LPSKVFSISETPQHEFRGHTGEILDLSWSEKGF--LLSSSVDE--TVRLWRVGSSDECI 398
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 390 NVARGVQKILQDYKSXQDIIAILGMDELSEEAKLTVARARKIQ 262
N+ +++LQ +I+ ++G D L+E K+T+ A+ ++
Sbjct: 477 NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR 519
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 338 TLLLFWVWTSCLKK 297
+LLLFW W CLK+
Sbjct: 303 SLLLFWYWEDCLKQ 316
>At3g48280.1 68416.m05269 cytochrome P450, putative nearly identical
to cytochrome P450 71A25 (SP:Q9STK8) [Arabidopsis
thaliana];
Length = 490
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 315 DELSEEAKLTVARARKIQRFPHNLSK*LRC 226
D EE L +A+ RK P N+SK L C
Sbjct: 144 DVREEEITLMMAKIRKSSSLPFNVSKVLEC 173
>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 326
Score = 27.1 bits (57), Expect = 5.1
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = -3
Query: 229 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 83
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 230 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 282
>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 299
Score = 27.1 bits (57), Expect = 5.1
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = -3
Query: 229 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 83
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 203 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 255
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 259 PLNFTCTCHCQLGFFRQLVHTQNSNNVLXGFVVLKNFL 372
P+ CHC LGF R L + L + ++ FL
Sbjct: 8 PITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFL 45
>At1g36060.1 68414.m04481 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor GI:4567204 from [Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 382 TWSSENSSGLQIXAGHYCYFGYGRVV*RSQVDSGTCT*NSEVPSQP 245
T+ S S LQ + F Y + + D+ TC N PSQP
Sbjct: 78 TYPSSFGSDLQQPENYQSQFHYQNTITYTHQDNNTCMLNFIEPSQP 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,088
Number of Sequences: 28952
Number of extensions: 164081
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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