Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0784.Seq
         (433 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P32461 Cluster: Diphthamide biosynthesis protein 2; n=3...    33   2.6  
UniRef50_Q7RYG4 Cluster: Putative uncharacterized protein NCU065...    32   4.5  

>UniRef50_P32461 Cluster: Diphthamide biosynthesis protein 2; n=3;
           Saccharomycetales|Rep: Diphthamide biosynthesis protein
           2 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 534

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 276 NFPKFFPDL*FKCHFMFNIIYIKRLSRIYD*CKDNLIYLN 157
           NF + FPDL  K   M N  + K LS++Y+  K +L Y N
Sbjct: 154 NFQRAFPDLSSKICLMANAPFSKHLSQLYNILKGDLHYTN 193


>UniRef50_Q7RYG4 Cluster: Putative uncharacterized protein
           NCU06511.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU06511.1 - Neurospora crassa
          Length = 797

 Score = 32.3 bits (70), Expect = 4.5
 Identities = 22/66 (33%), Positives = 27/66 (40%)
 Frame = +1

Query: 226 KHKVALESQIWKKFGEILASTKARPPATRRWSNKIHYPYVRQDILHXRITGTRESPRVSC 405
           +H   ++ +IW       A    RPP+T   SN   Y Y  Q   H R      SPR S 
Sbjct: 25  RHSFDVDFKIWS-MPNASAEVGDRPPSTSSGSNDWSYSYSNQ-TAHTRNGTNGSSPRTSV 82

Query: 406 P*PCAY 423
           P   AY
Sbjct: 83  PPGLAY 88


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,918,024
Number of Sequences: 1657284
Number of extensions: 6255423
Number of successful extensions: 11850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11848
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)