Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0784.Seq
         (433 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   2.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   5.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.6  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 246 FKCHFMFNII 217
           F CHF+F+I+
Sbjct: 669 FHCHFLFHIV 678


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 246 FKCHFMFNII 217
           F CHF+F+I+
Sbjct: 669 FHCHFLFHIV 678


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 323 TKYIILTLGKIFYXTGLLG 379
           T YIILT  +  Y T L+G
Sbjct: 235 TLYIILTNNQAKYCTTLIG 253


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 328 FCWTSVESPAVGPSSMLKFPQIFSRFVI 245
           F WT +   A      ++F Q +++F++
Sbjct: 130 FVWTRIMGVAYYEQYAVEFFQFYAQFIV 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,675
Number of Sequences: 336
Number of extensions: 1813
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)