Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0784.Seq
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   6.6  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    24   8.7  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 351 RYFTXQDYWDAGIPARLXSVTVRL 422
           RY    D+  AGIPA L S  + L
Sbjct: 832 RYLKVSDFLKAGIPATLISFVILL 855


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 205 SFNIDNIKHKVALESQIWKKFGEILASTKARPPATRRWSNKIHYPYVRQDILH 363
           S N+  I  K+   +Q W  + E L +   RPP   + +++ H P     ++H
Sbjct: 341 SMNLHAIIQKLT-GAQEWDSYAEGLLAGDYRPPRKGKHNDRAHPPIHPVQMVH 392


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 214 IDNIKHKVAL---ESQIWKKFGEILASTKARPP 303
           +D ++ +V +   +S+ W++  EIL S +  PP
Sbjct: 486 VDRVEQRVEMISDDSKKWRRVEEILESNRFSPP 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,552
Number of Sequences: 5004
Number of extensions: 28288
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)