Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0783.Seq
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 27 0.94
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 0.94
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 3.8
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 6.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 6.7
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 6.7
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 6.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 8.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 8.8
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 24 8.8
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 0.94
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 85 YFVGFQN-SEVMINRDNWGHSYCDVRGEI 2
Y VG+ N + ++++ WGHS+ +V E+
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEEL 170
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 0.94
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 178 CRPTSTLTEEHRDRILILNRRFLERRSPTICSANVSVSPR-MRCTDSAAHKCNYELFNRN 354
C P ++ + +RILI R F + ++ S + R +R AA KC +E
Sbjct: 32 CNPCYSIEKLKSNRILIAVRLF------SFAFSSFSTTLRILRDFIIAASKCEFEKIWST 85
Query: 355 NFSIRYWSWNYR 390
FSI + S+N++
Sbjct: 86 TFSISFLSFNFK 97
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 249 TPLTDDMLRKRVSITADAVHRQRG 320
TP+T + + +RV++ AV QRG
Sbjct: 383 TPMTYETIEERVTVPISAVSTQRG 406
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 77 NKIEPRSYSIIPCTKYSSSIFSP 145
N ++P+S +++P T + SI SP
Sbjct: 29 NPVKPQSSNVVPGTSHIGSIKSP 51
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 101 NMISVLFCWFSELRGND 51
N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 299 IRGDTD-TFAEHIVGERRSKKRRFNIKI 219
IR TD T +E VGER++ K+ + IK+
Sbjct: 14 IRHLTDGTISEVFVGERKNSKKLYVIKV 41
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 135 FLARFEHSNLFKVKLSAHLDTHRRAPR*DFD 227
F A + L + LS H+ TH AP FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 263 VGERRSKKRRFNIKILSRCSSVSVEVGRQFYFEQI 159
+G S KR+ K S+ +S S+ V Q FEQ+
Sbjct: 177 LGSSTSSKRKKKKKKKSKANSASLNVDDQRDFEQV 211
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 311 SVHRIRGDTDTFAEHIVGERRSKKRR 234
++HR + D FA+H G++R+ R
Sbjct: 427 AIHRAQADVFKFADHQHGKKRAAAAR 452
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 193 TLTEEHRDRILILNRRFLERRSPTICS 273
TLT++ +L ++FLE+R+P + S
Sbjct: 369 TLTDKDIGELLTDGQQFLEKRNPALSS 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,987
Number of Sequences: 5004
Number of extensions: 29829
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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