Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0783.Seq
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0005 - 16886553-16886946,16887079-16887404                       28   3.8  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    27   6.6  
06_01_0603 - 4350124-4350590,4350995-4353608                           27   8.7  

>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 349 RNNFSIRYWSWNYRGC 396
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 232  NRRFLERRSPTICSANVSVSPRMRCTDSAAHKCNYELFNRNNFS 363
            N+R  E     IC   ++    + C D+  H C+  L +  N +
Sbjct: 1263 NKRVCEEWFSRICDPMLNAGLALHCNDAVIHYCSSRLLDIRNLA 1306


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 248 NAAHRRYAPQTCQYHRG---CGAPTARRTNATTSFLTATI 358
           +AA  R  P  C Y  G   CGA TARRT    + L A +
Sbjct: 576 SAAAFRGNPGLCGYVPGIAACGAATARRTRHRRAVLPAVV 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,502
Number of Sequences: 37544
Number of extensions: 201506
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)