Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0783.Seq
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.006
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.31 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.95 
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   1.3  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                29   2.2  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   2.2  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   6.7  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  27   6.7  
SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 21/45 (46%), Positives = 25/45 (55%)
 Frame = -2

Query: 435 ILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 301
           ++ R +WRASL           AY K+VAVKKLVV F    VG P
Sbjct: 58  LVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 21/42 (50%), Positives = 23/42 (54%)
 Frame = -2

Query: 426 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 301
           R +WRASL           AY K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 19/38 (50%), Positives = 20/38 (52%)
 Frame = -2

Query: 414 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 301
           RASL           AY K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = -2

Query: 426 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGAP 301
           R    ASL           AY K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 366 YTKIVAVKKLVVAFVRRAVGAP 301
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 366 YTKIVAVKKLVVAFVRRAVGAP 301
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -2

Query: 366 YTKIVAVKKLVVAFVRRAVGAP 301
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 337 RSCICAPRCRCTASAVILTRLRSISSVSGVLKNAGSISKSY 215
           R  + +  CR    ++ L+RL +  +VS  L+N GS S+ +
Sbjct: 288 RDVLLSLTCRHITCSIALSRLITTCTVSDTLRNGGSTSRRF 328


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 328 CNYELFNRNNFSIRYWSWNYRGCWH 402
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 265 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 387
           I S     S R+RCT S + KC     + + F    W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 265 ICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYW 375
           I S     S R+RC+ S ++KC ++    + F    W
Sbjct: 294 ISSGYYGSSYRLRCSTSTSYKCRFDSIGDSAFQGNNW 330


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 262 TICSANVSVSPRMRCTDSAAHKCNYEL 342
           T C+ NV  S  ++C DS    CN E+
Sbjct: 157 TECACNVHGSASLQCDDSGVCPCNLEV 183


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 262 TICSANVSVSPRMRCTDSAAHKCNYEL 342
           T C+ NV  S  ++C DS    CN E+
Sbjct: 199 TECACNVHGSASLQCDDSGVCPCNLEV 225


>SB_39139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 274 ANVSVSPRMRCTDSAAHKCNYELFNRNNFSIR 369
           +N S++P +  TD   HK   EL N+N   IR
Sbjct: 16  SNRSLNPSITYTDMHRHKSELELKNKNAGKIR 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,353
Number of Sequences: 59808
Number of extensions: 235209
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)