Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0783.Seq
         (436 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting pro...    30   4.0  
BC063026-1|AAH63026.1|   95|Homo sapiens NDUFB2 protein protein.       29   9.1  
AC006344-2|AAD43191.1|   95|Homo sapiens NADH-ubiquinone oxidore...    29   9.1  

>AK124536-1|BAC85877.1|  170|Homo sapiens PTPRF), interacting
           protein (liprin), alpha 2  protein.
          Length = 170

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 271 SANVSVSPRMRCTDSAAHKCNYELFNRNNF 360
           S  +++ PR++C+ +    CN+EL   +NF
Sbjct: 9   SQGLALLPRLKCSGAIIAHCNFELLGSSNF 38


>BC063026-1|AAH63026.1|   95|Homo sapiens NDUFB2 protein protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +1

Query: 202 EEHRDRILILNRRFLERRSPTICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSW 381
           E H  + L+L+    E RS       V + PR R           ++F    FS   W W
Sbjct: 2   ESHERQPLVLHEEMGECRSSLSAGGGVHIEPRYRQFPQLTRS---QVFQSEFFSGLMWFW 58

Query: 382 NYRGCWHQT 408
                WH +
Sbjct: 59  ILWRFWHDS 67


>AC006344-2|AAD43191.1|   95|Homo sapiens NADH-ubiquinone
           oxidoreductase AGGG subunit protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +1

Query: 202 EEHRDRILILNRRFLERRSPTICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSW 381
           E H  + L+L+    E RS       V + PR R           ++F    FS   W W
Sbjct: 2   ESHERQPLVLHEEMGECRSSLSAGGGVHIEPRYRQFPQLTRS---QVFQSEFFSGLMWFW 58

Query: 382 NYRGCWHQT 408
                WH +
Sbjct: 59  ILWRFWHDS 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,825,351
Number of Sequences: 237096
Number of extensions: 1091271
Number of successful extensions: 1929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)