Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0783.Seq
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    30   0.63 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z49908-6|CAA90100.3|  327|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 238 RFLER-RSPTICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 387
           +F ER R+   C  NV + P     DSA H  N   +N     I    WNY
Sbjct: 200 QFHERLRAMAACLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 355 CCG*KARSCICAPRCRC 305
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 208 HRDRILILNRRFLERRSPTICSANVSVSPRMRCTDS 315
           H   + + NR +L+   P IC   VS+ PR+  T S
Sbjct: 417 HLIAVNLKNRTYLDLAQPAICWMTVSLPPRLPYTYS 452


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 266 IVGERRSKKRRFNIKILSRCSSVSVEVGRQF 174
           IVG+  S  R  NI+ +SRC   + E+  QF
Sbjct: 228 IVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 258


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 266 IVGERRSKKRRFNIKILSRCSSVSVEVGRQF 174
           IVG+  S  R  NI+ +SRC   + E+  QF
Sbjct: 231 IVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 261


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 266 IVGERRSKKRRFNIKILSRCSSVSVEVGRQF 174
           IVG+  S  R  NI+ +SRC   + E+  QF
Sbjct: 231 IVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 261


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 260 RRYAPQTCQYHRGCGAPTARRTNATTSFL 346
           R+  P+TC Y  G G  T  RT+ T + L
Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTTCADL 158


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 223 LILNRRFLERRSPTICSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 372
           +I+     + RS     +N++V      + SA HK NYEL    +F +RY
Sbjct: 83  IIIEHGCTKGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


>Z49908-6|CAA90100.3|  327|Caenorhabditis elegans Hypothetical
           protein C07E3.6 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 192 DTHRRAPR*DFDIEPAFFRTPLTDDMLRKRVSITADAVH 308
           D H+  P     I PA   TP+   +L +R SI ++ +H
Sbjct: 69  DEHQEEPPTPKTIAPAPIATPVLKPLLPQRESIVSNGIH 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,816
Number of Sequences: 27780
Number of extensions: 181633
Number of successful extensions: 402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)