Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    45   0.001
UniRef50_Q1D592 Cluster: Non-ribosomal peptide synthase/polyketi...    34   2.9  
UniRef50_Q0U4X9 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   5.1  
UniRef50_A0E8B9 Cluster: Chromosome undetermined scaffold_82, wh...    33   6.7  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 27/59 (45%), Positives = 34/59 (57%)
 Frame = -3

Query: 500 RKMRPTERMRRETQWAKW*WTGRIASRKDGRXGQKALELRPRTQ*RICSLGCPRPQATN 324
           R+ R T+  RR  +  KW W G IA R DGR G+K LE RPR   R  S+G P  + T+
Sbjct: 407 RRTRVTDIARRIAK-IKWQWAGHIARRADGRWGRKVLEWRPRAGRR--SVGRPPTRWTD 462


>UniRef50_Q1D592 Cluster: Non-ribosomal peptide synthase/polyketide
            synthase; n=2; Bacteria|Rep: Non-ribosomal peptide
            synthase/polyketide synthase - Myxococcus xanthus (strain
            DK 1622)
          Length = 3780

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 506  PDRKMRPTERMRRETQWAKW*WTGRIASRKDGRXGQKALELRPR 375
            PDR  R  E M R  +  +  W G    R++G   + AL LRPR
Sbjct: 1827 PDRYARRKEVMHRGIEEVRTLWRGGTVRRRNGAGAEVALSLRPR 1870


>UniRef50_Q0U4X9 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 125

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 268 WQ*SNFIM*SIWWMLRKGRLVAWGLGQPRLQ--IRYWV 375
           W+ SNF+   IWWM+  G L  W +  PR      YWV
Sbjct: 75  WELSNFMQRQIWWMMADGDL-RWMVKAPRAHPLYPYWV 111


>UniRef50_A0E8B9 Cluster: Chromosome undetermined scaffold_82, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_82,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 197

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -1

Query: 280 CFIANFYLKDLEI*EKKLVLFRKNMVHEFL-QLVICSNILCQLGILGYDNFYTSVINFQH 104
           CFI     K+  +  +KL+   KN++ ++  +L     I+C++ I+ YD FY   I +Q+
Sbjct: 75  CFIVGNLFKEFALNNQKLIKKIKNVIKKYYKKLHSIQLIICRIQII-YDIFYNQFIYYQN 133

Query: 103 L 101
           +
Sbjct: 134 V 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,886,483
Number of Sequences: 1657284
Number of extensions: 9413488
Number of successful extensions: 22031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22027
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)