Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   2.7  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   4.8  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.3  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   8.4  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   8.4  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 545 RIPGKSRASQNLPPDRKMRPTERMRRETQWAK 450
           R P   R +     DRK R  E M +E QW K
Sbjct: 141 RPPTSMRQAIPKDEDRKPRTLEEMEKEAQWLK 172


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 263 KVGNKAISLCSLYGGC*ERGGWW 331
           K GN  + LC    G  + G WW
Sbjct: 63  KEGNNCLLLCHALSGSADAGDWW 85


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = -1

Query: 238 EKKLVLFRKNMVHEFLQLVICSNILCQLGIL 146
           ++ ++L  ++ +HE+L+L++CS  L  +GIL
Sbjct: 98  KRTVLLPHRSPIHEYLKLIVCSP-LYFMGIL 127


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = -1

Query: 235 KKLVLFRKNMVHEFLQLVICSNILCQLGILGYDNFYTSV------INFQHLIAS*IFEYL 74
           +K++L     +  F++  I SN   QL I   DN + ++      +NFQ L++  IFE  
Sbjct: 24  EKVLLEELRKLRGFIRNDIPSNFFPQLFIT--DNGFAAIKKAVTKLNFQSLLSLDIFECC 81

Query: 73  IKHN*FVRSYLLSQVWVRS 17
           ++      SY + + W+ S
Sbjct: 82  LQILGIATSYTILRSWLLS 100


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 279 QFHYVVYMVDAEKGAVGGLGPRAAETAN-PLLGTRTQL*SFLAXAAIFST 425
           Q+ Y +Y  DA+K  +  L   A  TAN  +L   + L S  +  ++ +T
Sbjct: 418 QYVYSIYDWDAQKIGLAALNSNATSTANHQILNINSALRSVTSGQSVSAT 467


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 539 PGKSRASQNLPPDRKMRPTERMRRETQWAK 450
           P   R + N+P D      E++R+E +WA+
Sbjct: 130 PEDIRKTFNIPNDFTPEEEEQIRKENEWAE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,673
Number of Sequences: 5004
Number of extensions: 39766
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)