Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0910 + 8968896-8968932,8969111-8969181,8970417-8970740,897...    29   3.7  
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518...    28   6.5  
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241...    28   6.5  

>08_01_0910 +
           8968896-8968932,8969111-8969181,8970417-8970740,
           8972878-8972934,8974578-8974641,8974749-8974810
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 540 PWQEPCFAESTTGSENATH*EDAARNSVG*VVVDRAHC**KRWPXW 403
           P Q+   +E+  G+   TH E+A R      V+D   C    WP W
Sbjct: 79  PQQQAIKSETIEGAAAGTHREEAKRKGNTDFVMDDDGCGLPLWPWW 124


>09_06_0192 -
           21450158-21450276,21451084-21451573,21451750-21451862,
           21451992-21452376,21452461-21452529,21453165-21453264,
           21454465-21454637,21454737-21454782,21454879-21454954,
           21455160-21455196,21455799-21456041
          Length = 616

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 358 AVSAALGPKPPTAPFSASTI*TT**NC 278
           + S + GP+P +AP+++STI T   NC
Sbjct: 502 STSHSAGPQPSSAPYASSTITTHRVNC 528


>04_04_1488 -
           33922253-33922361,33922459-33922649,33922752-33924130,
           33924205-33924340,33924427-33924502,33924806-33924925,
           33925005-33925082,33925605-33925695,33925805-33925889,
           33925977-33926132,33926317-33926373,33926454-33926552,
           33926702-33926814,33926924-33927014
          Length = 926

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 338 PQATNRPFLSIHHIDYIMKLLYCQLLFKRFRNLGKKISFISQEYGT 201
           P+A   P+ S+ HI  +   L   LL +  + LG  +SF    Y +
Sbjct: 384 PRAQGNPYGSLQHIPAVGSELAIMLLNQSGQTLGSPLSFHQSSYSS 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,874
Number of Sequences: 37544
Number of extensions: 262548
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)