Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    28   5.0  
SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  

>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 487 GRIFRSGGRFCEARLLPGIRGSNVIQV 567
           G +FR+   F E R  PGI+G NV ++
Sbjct: 558 GNVFRNEEVFLEVRKTPGIQGVNVSKI 584


>SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 497 KMRPTERMRRETQWAKW*-WTGRIASRKDGRXGQ 399
           K R T R RR     KW  WT R  +R DG+ GQ
Sbjct: 3   KRRWTRRTRRRWTRRKWRKWTSRRWTRGDGQAGQ 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,449
Number of Sequences: 59808
Number of extensions: 301052
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)