Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095890-1|BAC04643.1|  143|Homo sapiens protein ( Homo sapiens ...    33   0.77 
X63692-1|CAA45219.1| 1616|Homo sapiens DNA (cytosine-5-)-methylt...    29   9.5  
BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.        29   9.5  
AB209413-1|BAD92650.1| 1606|Homo sapiens DNA (cytosine-5-)-methy...    29   9.5  

>AK095890-1|BAC04643.1|  143|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38571 fis, clone HCHON2006770, highly similar to
           Homo sapiens gremlin mRNA. ).
          Length = 143

 Score = 33.1 bits (72), Expect = 0.77
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 557 TLLPRIPGKSRASQNL--PPDRKMRPTERMRRETQWAK 450
           TLLP   GK + SQ    PPD+ +  TER   +  W K
Sbjct: 17  TLLPAAEGKKKGSQGAIPPPDKALHVTERKYLKRDWCK 54


>X63692-1|CAA45219.1| 1616|Homo sapiens DNA
           (cytosine-5-)-methyltransferase protein.
          Length = 1616

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -1

Query: 259 LKDLE---I*EKKLVLFRKNMVHEFLQLVICSNILCQL 155
           LKDLE   + EK+ V  + N++HEFLQ  I  N LC L
Sbjct: 28  LKDLERDSLTEKECVKEKLNLLHEFLQTEI-KNQLCDL 64


>BC126227-1|AAI26228.1| 1632|Homo sapiens DNMT1 protein protein.
          Length = 1632

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -1

Query: 259 LKDLE---I*EKKLVLFRKNMVHEFLQLVICSNILCQL 155
           LKDLE   + EK+ V  + N++HEFLQ  I  N LC L
Sbjct: 28  LKDLERDSLTEKECVKEKLNLLHEFLQTEI-KNQLCDL 64


>AB209413-1|BAD92650.1| 1606|Homo sapiens DNA
           (cytosine-5-)-methyltransferase 1 variant protein.
          Length = 1606

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -1

Query: 259 LKDLE---I*EKKLVLFRKNMVHEFLQLVICSNILCQL 155
           LKDLE   + EK+ V  + N++HEFLQ  I  N LC L
Sbjct: 15  LKDLERDSLTEKECVKEKLNLLHEFLQTEI-KNQLCDL 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,653,854
Number of Sequences: 237096
Number of extensions: 1476324
Number of successful extensions: 2915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2915
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)