Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 467  LAASSQWVAFSDPVVDSAKHGSCQGFXV 550
            L++S   + +S P+ +  +HG  QGF V
Sbjct: 1018 LSSSEILITWSPPLPE-LRHGDIQGFNV 1044



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 318  GAVGGLGPRAAETANPLLGTRTQL*SFL 401
            G +GGLG  A  +A  L    T L SF+
Sbjct: 1714 GGLGGLGGAAEASAAGLHPNNTLLHSFM 1741


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 467  LAASSQWVAFSDPVVDSAKHGSCQGFXV 550
            L++S   + +S P+ +  +HG  QGF V
Sbjct: 1014 LSSSEILITWSPPLPE-LRHGDIQGFNV 1040



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 318  GAVGGLGPRAAETANPLLGTRTQL*SFL 401
            G +GGLG  A  +A  L    T L SF+
Sbjct: 1710 GGLGGLGGAAEASAAGLHPNNTLLHSFM 1737


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -2

Query: 564  LNDVATXNPWQEPCFAESTTGSENATH 484
            + +V   +  +  C+ E+T G +  TH
Sbjct: 1333 IKEVDRTDAGEYSCYVENTFGHDTVTH 1359


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 2   HTFTHTSHPHLR*Q 43
           H   HT HPH++ Q
Sbjct: 169 HHQMHTQHPHMQPQ 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,910
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)