Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0782.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43760.1 68416.m04675 hypothetical protein                          28   4.1  
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    28   4.1  
At4g19840.1 68417.m02908 lectin-related similar to PP2 lectin po...    27   7.2  

>At3g43760.1 68416.m04675 hypothetical protein
          Length = 280

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 319 GRLVAWGLGQPRLQIRYWVR 378
           GR++ W  G+  +Q++YW R
Sbjct: 233 GRMLRWNRGETAIQLKYWKR 252


>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 554 LLPRIPGKSRASQNLPPDRKMRPTERMRRETQWAKW*WTGRIASRKDGRXGQKALEL 384
           LLP  P        L P R  R       E +WA    +G + S+K+G    + ++L
Sbjct: 488 LLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKKNGLESSRDMDL 544


>At4g19840.1 68417.m02908 lectin-related similar to PP2 lectin
           polypeptide [Cucurbita maxima] GI:410437
          Length = 246

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 346 QPRLQIRYWVRGRNSRAF 399
           +P+ QI+YWV  RNS  F
Sbjct: 78  KPKKQIKYWVDERNSNCF 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,829
Number of Sequences: 28952
Number of extensions: 205641
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)