Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   2.6  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    22   2.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   2.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   2.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   5.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   7.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   7.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 374 QVACELATHLSNKNTTLH 321
           +V  ++  HLS+ +TT+H
Sbjct: 117 EVIIDVVNHLSSDSTTIH 134


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 60  IVLALLLSRDQVAI*SLLNPIDF 128
           +VL L +  DQV I   + P+DF
Sbjct: 38  VVLILKVLVDQVMILETMTPLDF 60


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 60  IVLALLLSRDQVAI*SLLNPIDF 128
           +VL L +  DQV I   + P+DF
Sbjct: 98  VVLILKVLVDQVMILETMTPLDF 120


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 60  IVLALLLSRDQVAI*SLLNPIDF 128
           +VL L +  DQV I   + P+DF
Sbjct: 98  VVLILKVLVDQVMILETMTPLDF 120


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 85  LDNNKARTISNMKFTHVPFRLHL 17
           +D N  R  +N+K TH   +L +
Sbjct: 77  VDQNGFRNFTNLKKTHPKVKLQV 99


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 5   QVITQMQSERDVSKLHV 55
           + ITQ  SERD    HV
Sbjct: 64  RAITQQHSERDERLAHV 80


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 FNINTLNKTYYPTTNV 209
           FNI+T N  Y P++ +
Sbjct: 29  FNISTSNYLYTPSSTI 44


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 FNINTLNKTYYPTTNV 209
           FNI+T N  Y P++ +
Sbjct: 29  FNISTSNYLYTPSSTI 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,777
Number of Sequences: 336
Number of extensions: 1857
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)