Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    30   0.59 
11_06_0117 + 20302795-20304816                                         29   1.0  
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    28   3.1  
03_04_0117 + 17411064-17411955,17412111-17413543                       27   4.1  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    27   7.2  
05_07_0006 - 27001038-27001600,27001713-27001980                       27   7.2  
03_03_0060 - 14157352-14158851                                         27   7.2  

>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 2   FQVITQMQSERDVSKLHVAYSSCFIVVQRPSGNLIASKSNRFRPNIGS 145
           F+  T +QS  + S + +    CF+  +R  G+  +S+  RF P  G+
Sbjct: 364 FEEATAVQSAIEASPVMIGGRQCFVEEKRTPGSRGSSRGGRFAPGRGN 411


>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 150 IIEPIFGRNLLDLEAIKLPLGLWTTIKQEL 61
           I+EPI  RNL +LE++ L LGL +    EL
Sbjct: 311 ILEPILLRNLCNLESLNLQLGLLSGNMTEL 340


>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 232 LHRAHHCAAESLNRSVSHAADTSDTGNSPSCS 327
           +H+ H  ++   + S+SH++ +  + +SPSCS
Sbjct: 689 MHQHHRLSSNIPSTSLSHSSCSQSSDSSPSCS 720


>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 256 AESLNRSVSHAADTSDTGNSPSCSVVFLLLRCV 354
           AE +NRS+    D SD+G   +C +  ++L  +
Sbjct: 437 AEFINRSIVQPLDISDSGKVKTCRIHDIMLEVI 469


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 265  LNRSVSHAADTSDTGNSP 318
            LN++  HAA T D GN P
Sbjct: 3586 LNQAAEHAAPTEDDGNGP 3603


>05_07_0006 - 27001038-27001600,27001713-27001980
          Length = 276

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 118 GFRSDQIATWSLDNNKARTISN-----MKFTHVPFRLHLC 14
           GF  D IA  S  N+ + + S        + HV FRLHLC
Sbjct: 104 GFGDDNIAILSCGNDDSSSSSYAVAVLQPWYHVDFRLHLC 143


>03_03_0060 - 14157352-14158851
          Length = 499

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 232 LHRAHHCAAESLNRSVSHAADTSDTGNSPSCSVV 333
           LH A H +  +    ++HAA   D G S S SVV
Sbjct: 351 LHEAFHLSELNGVLCLAHAAGAGDEGTSTSSSVV 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,963
Number of Sequences: 37544
Number of extensions: 180274
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)