Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_16295| Best HMM Match : AraC_E_bind (HMM E-Value=4.4)               28   2.4  
SB_56429| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=0.71)           26   9.8  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_52001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  SKLHVAYSSCFIVVQRPSGNLIASKSNRFR 130
           S L V  SS F+ +QRP GNL   + +  R
Sbjct: 72  SSLSVLPSSTFLAIQRPQGNLTTKRHSSDR 101


>SB_16295| Best HMM Match : AraC_E_bind (HMM E-Value=4.4)
          Length = 228

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 136 IWAKSIGFRSDQIATWSLDNNKARTISNMKFTHVPFRLHL 17
           IW ++ G   + + TWSLD       S+++F  +P   H+
Sbjct: 80  IWMRNAGLEWNVLQTWSLDKEYGDVFSSVEF--LPCETHI 117


>SB_56429| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=0.71)
          Length = 99

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 268 NRSVSHAADTSDTGNSPSCSVVFLLLRCVASSQATW 375
           NR +SHA DTS T    + S+  +  +   +    W
Sbjct: 15  NREISHAVDTSSTIAEATTSIAVVKKKAFKAVSEAW 50


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 268  NRSVSHAADTSDTGNSPSCSVVFLLLRCVASSQATW 375
            NR +SHA DTS T    + S+  +  +   +    W
Sbjct: 2547 NREISHAVDTSSTIAEATTSIAVVKKKAFKAVSEAW 2582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,419
Number of Sequences: 59808
Number of extensions: 226150
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)