Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    27   5.0  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    27   5.0  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    27   5.0  
Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 211 KTLVVG*YVLFSVLMLKIHT 152
           KTL VG YVLF+  +L+++T
Sbjct: 483 KTLTVGDYVLFTTYLLQLYT 502


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 211 KTLVVG*YVLFSVLMLKIHT 152
           KTL VG YVLF+  +L+++T
Sbjct: 483 KTLTVGDYVLFTTYLLQLYT 502


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 211 KTLVVG*YVLFSVLMLKIHT 152
           KTL VG YVLF+  +L+++T
Sbjct: 483 KTLTVGDYVLFTTYLLQLYT 502


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 211 KTLVVG*YVLFSVLMLKIHT 152
           KTL VG YVLF+  +L+++T
Sbjct: 483 KTLTVGDYVLFTTYLLQLYT 502


>Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical
           protein M88.6b protein.
          Length = 594

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 112 RSDQIATWSLDNNKARTISNMKFTHVP 32
           RSD+I T SL  N    IS   F H P
Sbjct: 317 RSDRIETLSLARNNLSQISPKAFQHTP 343


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 112 RSDQIATWSLDNNKARTISNMKFTHVP 32
           RSD+I T SL  N    IS   F H P
Sbjct: 317 RSDRIETLSLARNNLSQISPKAFQHTP 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,198
Number of Sequences: 27780
Number of extensions: 164624
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)