Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   3.9  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   6.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 50  HVAYSSCFIVVQRPSGNLIASKSNRFRPNIGSIMC 154
           + A  + F+V++RP   L      R R  + ++ C
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTC 688


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 92  SGNLIASKSNRFRPNI-GSIMCVNF*H*HTK*NILPDD*RFKNFTECCYI 238
           SG +  +   R+   I G     +F    TK N+L    RFK  T+C ++
Sbjct: 24  SGAIKGNDYQRYHQQISGDRFSKDFYRQDTKNNLLNAYVRFKLVTDCIFV 73


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 139 NIWAKSIGF 113
           N+WAKS GF
Sbjct: 28  NLWAKSEGF 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,163
Number of Sequences: 438
Number of extensions: 1956
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)