Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0780.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11220.1 68418.m01311 expressed protein                             29   0.86 
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa...    28   2.6  
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    28   2.6  
At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family...    27   4.6  

>At5g11220.1 68418.m01311 expressed protein
          Length = 265

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 PVILATRPRAVLCFYCLDA 352
           PVI+A    AVLCF CLD+
Sbjct: 25  PVIMALANEAVLCFQCLDS 43


>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain,
           PF01485: IBR domain
          Length = 543

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 232 LHRAHHCAAESLNRSVSHAADTSDTGNS 315
           L R HHCA   L +    + D SDT N+
Sbjct: 440 LERLHHCAENELKQFFIKSEDPSDTFNA 467


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 232 LHRAHHCAAESLNRSVSHAADTSDTGNS 315
           L R HHCA   L +    + D SDT N+
Sbjct: 430 LERLHHCAENELKQFFIKSEDPSDTFNA 457


>At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; Common family member At5g52430
           [Arabidopsis thaliana];
          Length = 449

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 41  SKLHVAYSSCFIVVQRPSGNLIASKSNRFRPNIGSIMCVNF 163
           S  H  + SC +    P GNLI+  S    P  G    + F
Sbjct: 193 SAAHYEFKSCQVYPGSPGGNLISPGSGTSSPYPGKCSIIEF 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,376
Number of Sequences: 28952
Number of extensions: 147476
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)