Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0779.Seq
         (435 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   0.54 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   3.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 368 LKFGVLLWC---LTYVGACFNGITLIILGWIALFTLPK 264
           L F +LLW    L ++  C N     +  WI L+TL K
Sbjct: 138 LFFVILLWISFFLNFMLHCNNTTWRCLYRWIVLYTLSK 175


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 225 ELARAKINEITAKVRAAVPLGRRAEGDKDK*TPLRAVIY*LHYYFT 88
           ++ R K+N    ++   VP+  R+    DK + LR     L  Y T
Sbjct: 38  KMRRDKLNSYIGELATLVPMVARSAKRMDKTSILRLAATHLRIYQT 83


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 374 DSLKFGVLLWCLTYVG 327
           D   FGVLLW +  +G
Sbjct: 676 DVWSFGVLLWEIVTLG 691


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,674
Number of Sequences: 336
Number of extensions: 875
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)