Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0779.Seq
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    26   2.9  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    24   8.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   8.8  

>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 318 EARPHVREAPQQHAELXRVHQVLHQEQSAQLIQ 416
           EAR  +RE  ++HA++ R+ + +   + AQL Q
Sbjct: 176 EARTALREVQERHADIKRIERTI--AELAQLFQ 206


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 270 QREQRYPTEDDERDPVEARPHVREAPQQ 353
           Q E +  +ED+E DP   R   +E  QQ
Sbjct: 69  QEEVKEESEDEEEDPAMLRADPKEWKQQ 96


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 342 APQQHAELXRVHQVLHQEQSAQ 407
           APQQH +L R+  +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,917
Number of Sequences: 5004
Number of extensions: 15177
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)